CNAnorm-class(CNAnorm)
CNAnorm-class()所属R语言包：CNAnorm
Class "CNAnorm"
类“CNAnorm”
译者：生物统计家园网 机器人LoveR
描述----------Description----------
Class to Contain and Describe copy number aberration (CNA) data from low coverage (approx 0.01 - 0.5X) Next Generation Sequencing
类来包含和描述拷贝数畸变（CNA）的覆盖率低（约0.01 - 0.5X）新一代测序数据
类的对象----------Objects from the Class----------
Objects can be created by calls of the form new("CNAnorm", InData).
创建对象可以通过检测的形式new("CNAnorm", InData)。
插槽----------Slots----------
InData: Object of class "InData". Contains input data provided by the user. All slots have same length. Each element describe one window.
InData类"InData"的对象。包含由用户提供的输入数据。所有插槽都具有相同的长度。每个元素描述了一个窗口。
DerivData: Object of class "DerivData". Contains data derived from "InData". It can be Retrieved by the user, but methods should be used to populate
DerivData类"DerivData"的对象。包含"InData"派生的数据。它可以由用户进行检索，但应采用的方法来填充
Res: Object of class "Res". Contains slots with obtained results. See Class "Res"
Res类"Res"的对象。包含插槽与取得的成果。见类"Res"
Params: Object of class "Params". Contains crucial parameters passed to some
Params类"Params"的对象。包含传递一些关键参数
方法----------Methods----------
Summary of methods for class "CNAnorm". Type "methods ? methodName" for more details about methodName.
综述类"CNAnorm"方法。类型"methods ? methodName"有关methodName的更多细节。
chrs signature(object = "CNAnorm"): Retrieve Chromosomes/contig name
CHRSsignature(object = "CNAnorm")：找回染色体/重叠群名称
chrs<- signature(object = "CNAnorm"): Set Chromosomes/contig name
CHRS < - signature(object = "CNAnorm")：染色体/重叠群名称
guessPeaksAndPloidy signature(object = "CNAnorm"): Estimate ploidy
guessPeaksAndPloidysignature(object = "CNAnorm")：估计套数
length signature(x = "CNAnorm"): Returns number of element/windows
长度signature(x = "CNAnorm")：返回元/窗口的数量
[ signature(x = "CNAnorm"): Produce on object of class "CNAnorm" with a subser of windows
[signature(x = "CNAnorm")：生产类的对象"CNAnorm"与窗口subser，
plotGenome signature(object = "CNAnorm"): Plot annotated normalized genome copy number
plotGenomesignature(object = "CNAnorm")：图注明归基因组拷贝数
plotPeaks signature(object = "CNAnorm"): Plot peaks and estimated/validated ploidy
plotPeakssignature(object = "CNAnorm")：图峰和估计/验证套数
pos signature(object = "CNAnorm"): Retrieve Chromosomes/contig position
POSsignature(object = "CNAnorm")：找回染色体/重叠群的位置
pos<- signature(object = "CNAnorm"): Set Chromosomes/contig position
POS < - signature(object = "CNAnorm")：设置染色体/重叠群的位置
ratio signature(object = "CNAnorm"): Retrieve ratio (Test/Control).
比signature(object = "CNAnorm")：检索比（测试/控制）。
ratio.n signature(object = "CNAnorm"): Retrieve normalized ratio (not smoothed)
ratio.nsignature(object = "CNAnorm")：找回标准化比值（不平滑）
ratio.s signature(object = "CNAnorm"): Retrieve smoothed ratio
ratio.ssignature(object = "CNAnorm")：检索平滑的比例
ratio.n.s signature(object = "CNAnorm"): Retrieve normalized smoothed ratio
ratio.nssignature(object = "CNAnorm")：找回归平滑比
segMean signature(object = "CNAnorm"): Retrieve segmented ratio (as provided by DNAcopy)
segMeansignature(object = "CNAnorm")：找回分割比例（由DNAcopy提供）
segMean.n signature(object = "CNAnorm"): Retrieve normalized segmented ratio
segMean.nsignature(object = "CNAnorm")：找回归分割比
作者（S）----------Author(s)----------
Stefano Berri <a href="mailto:s.berri@leeds.ac.uk">s.berri@leeds.ac.uk</a> and Arief Gusnanto <a href="mailto:a.gusnanto@leeds.ac.uk">a.gusnanto@leeds.ac.uk</a>
参考文献----------References----------
<h3>See Also</h3> <code>InData</code>, <code>DerivData</code> for documentation on the slots.
举例----------Examples----------
data(LS041)
CNA <- new("CNAnorm", InData = new("InData", Chr = as.character(LS041$Chr), Pos = LS041$Pos,
Test = LS041$Test, Norm = LS041$Norm, GC = LS041$GC))
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
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发表于 2012-2-25 15:36:38
