This package provides a framework for the simulation of ChIP-seq experiments. An implementation of a simulation for nucleosome positioning experiments is provided as part of the package. Simulations for other experiments can be implemented using the provided framework.
这个软件包提供了一个框架为模拟芯片跳台实验。实施核小体定位实验模拟包的一部分提供。其他实验模拟可以实现使用提供框架。
Details
详情----------Details----------
Function simChIP is the main driver of the simulation. To simulate different types of experiments the functions passed to the functions argument of simChIP have to be replaced. See the vignettes for more detail.
功能simChIP是模拟的主要驱动力。实验,以模拟不同类型的功能传递给functionssimChIP必须被替换参数。看到更详细的护身符。
作者(S)----------Author(s)----------
Peter Humburg
Maintainer: Peter Humburg <eter.Humburg@well.ox.ac.uk>
参考文献----------References----------
参见----------See Also----------
ShortRead and its dependencies are used to handle short read and genomic sequences.
ShortRead和它的依赖用于处理短的读取和基因组序列。
举例----------Examples----------
## See the accompanying vignette 'Introduction to ChIPsim' for a detailed [#查看一个详细的介绍随行的暗角“ChIPsim”]
## example of how to use this package for nucleosome positioning simulations. [#例如如何使用这个包的核小体定位模拟。]
## A guide for the writing of extensions that cover other types of[#包括其他类型的扩展写作指南]
## experiments is provided in 'Extending ChIPsim'.[#实验是在“扩展ChIPsim”。]