qtlTable(wgaim)
qtlTable()所属R语言包:wgaim
Stack QTL summary information into a super table
堆栈QTL成超霸表的摘要信息
译者:生物统计家园网 机器人LoveR
描述----------Description----------
Stack QTL summary information into a super table ready for simple exporting
准备简单的出口堆栈成超霸表的的QTL总结信息
用法----------Usage----------
qtlTable(..., intervalObj = NULL, labels = NULL, columns = "all")
参数----------Arguments----------
参数:ldots
list of objects of class "wgaim". All "wgaim" models must have been analysed with the same genetic type (see wgaim.asreml)
类“wgaim”列表中的对象。 “wgaim”的车型必须已经分析了相同的遗传类型(见wgaim.asreml)
参数:intervalObj
a genetic object of class "interval" usually used in a wgaim fit
通常用在一个wgaim适合的遗传类对象的“间隔”
参数:labels
a vector of character strings determining the trait names of each QTL table. if this is NULL then the trait names are found from the response of the wgaim model
确定性状每个QTL表名称的字符串的向量。如果这是NULL,那么被发现从响应的wgaim模型性状名称
参数:columns
this can be either a numeric vector determining which columns of the QTL summaries should be outputted or "all" for all columns. The default is "all".
这可以是一个数值向量确定哪些应输出的QTL的摘要中的列或“all”为所有列。默认值是“all”。
参数:...
a numeric vector determining whcih columsn fo the summary should be returned (see Details)
应该返回一个数值向量确定酦columsn为总结(见详情)
Details
详细信息----------Details----------
The super table is created by stacking the QTL summaries on top of each other using the models in ... from left to right. An extra column is created on the left hand side of the stacked table for the trait names given in the labels argument. The names are only placed in the first element of each table with NAs for the rest of the elements. This then allows simple exportation to spreadsheet packages or with the LaTeX package xtable.
超级表被创建通过堆叠使用模型在彼此的顶部上的QTL摘要...由左到右。性状名称labels参数在给定的左手侧的层叠表上创建一个额外的列。这些名称仅放置在每个表中的第一个元素与定居的其余元素。这让简单的电子表格软件出口或LaTeX的包xtable。
值----------Value----------
A data.frame object with stacked QTL summaries
Adata.frame对象堆叠的QTL摘要
(作者)----------Author(s)----------
Julian Taylor
参考文献----------References----------
Bi-Parental Populations Using Linear Mixed Models. Journal of Statistical Software, 40(7), 1-18. URL http://www.jstatsoft.org/v40/i07/.
参见----------See Also----------
wgaim
wgaim
实例----------Examples----------
## Not run: [#不运行:]
## fit wgaim models[#适合wgaim模型。]
zn.qtl <- wgaim(zn.fm, phenoData = zinc, intervalObj = raccas,
merge.by = "id", trace = "trace.txt", na.method.X = "include")
zn.qtlS <- wgaim(zn.fmS, phenoData = zinc, intervalObj = raccas,
merge.by = "id", trace = "trace.txt", na.method.X = "include")
## create super table and export[#创建超霸表和出口]
qtlt <- qtlTable(zn.fm, zn.fmS, labels = c("Conc.", "Shoot"))
print(xtable(qtlt), file = "superQTL.tex", include.rownames = FALSE)
## End(Not run)[#(不执行)]
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注:
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