CNOlistDREAM(CellNOptR)
CNOlistDREAM()所属R语言包:CellNOptR
Data used for the DREAM3 challenge
使用的数据为DREAM3的挑战
译者:生物统计家园网 机器人LoveR
描述----------Description----------
This data object contains the DREAM data used in the package vignette, already loaded and formatted as a CNOlist object. This is to be used with the model "DreamModel". This is a data collected on HepG2 cells cultivated with or without stimulation of tgfa, ilk, mek12, pi3k and p38, in combination with inhibition of igf1 and/or il1a. Seven phosphoproteins are measured using Luminex xMAP assays: akt, erk12, ikb, jnk12, p38, hsp27 and mek12.
此数据对象中包含的DREAM数据包中的小插曲,已经加载和格式化作为CNOlist对象。这用于模型“DreamModel”。这是对HepG2单元培养或无刺激tgfa,之流,mek12,PI3K和p38结合,抑制IGF1和/或il1a收集数据。七磷酸均采用XMAP点阵仪检测:AKT,erk12,IKB,jnk12,P38,HSP27和mek12的。
用法----------Usage----------
CNOlistDREAM
格式----------Format----------
CNOlistDREAM is a list with the fields "namesCues" (character vector), "namesStimuli" (character vector), "namesInhibitors" (character vector), "namesSignals" (character vector), "timeSignals" (numerical vector), "valueCues" (numerical matrix), "valueInhibitors" (numerical matrix), "valueStimuli"(numerical matrix), "valueSignals"(numerical matrix).
CNOlistDREAM是一个领域的的“namesCues”(特征向量)的名单,的“namesStimuli”(特征向量),的“namesInhibitors”(特征向量),的“namesSignals”(特征向量),的“timeSignals”(数值向量),“valueCues”(数字矩阵),“valueInhibitors”(数字矩阵),的“valueStimuli”(数字矩阵),的“valueSignals”(数字矩阵)。
源----------Source----------
This data and model is extracted from the Matlab version of CellNOpt1.0 (http://www.ebi.ac.uk/saezrodriguez/software.html#CellNetOptimizer).
从MATLAB版本的CellNOpt1.0(http://www.ebi.ac.uk/saezrodriguez/software.html#CellNetOptimizer)提取这些数据和模型。
参考文献----------References----------
mammalian signal transduction, Molecular Systems Biology, 5:331, 2009.
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注:
注1:为了方便大家学习,本文档为生物统计家园网机器人LoveR翻译而成,仅供个人R语言学习参考使用,生物统计家园保留版权。
注2:由于是机器人自动翻译,难免有不准确之处,使用时仔细对照中、英文内容进行反复理解,可以帮助R语言的学习。
注3:如遇到不准确之处,请在本贴的后面进行回帖,我们会逐渐进行修订。
|