settings(cellHTS2)
settings()所属R语言包：cellHTS2
cellHTS2 HTML report settings
cellHTS2的HTML报告设置
译者：生物统计家园网 机器人LoveR
描述----------Description----------
Functions to control the output of writeReport through session-wide or call-specific settings.
writeReport通过会议广泛或调用特定的设置控制输出的功能。
用法----------Usage----------
setSettings(x)
getSettings()
参数----------Arguments----------
参数：x
A named list of settings. See details for supported values.
设置一个命名列表。详情请参阅支持的值。
Details
详情----------Details----------
The writeReport function produces a complete audit trail of the analysis in the form of an HTML report. The content of this report is highly customizable though session-wide and also though call-specific settings. The former are supposed to be set using the setSettings function by providing a named nested list of values. The latter can be set by passing a similiar list on to writeHTML as the optional settings argument. The current values for all available settings can be queried using the getSettings function.
writeReport函数生成一个HTML报告的形式分析了完整的审计线索。本报告的内容虽然会话范围和调用特定的设置，也不过是高度可定制的。前者应该设置使用setSettings功能提供了一个命名值的嵌套列表。后者可以通过一个类似的列表writeHTML可选settings参数设置。使用getSettings功能，可以查询所有可用的设置的当前值。
Similar to the structure of the HTML report, the available settings are broken up into subsections, and the names of these subsection have to be matched by the names in the nestes list structure:
类似结构的HTML报告，可用的设置被破坏成小节，这些款的名称必须在nestes列表结构的名称相匹配：
plateList The settings for all the plots in the plate list section of the report. There are several sub-section:
plateList板列表部分报告中的所有图的设置。有几个小节：
correlation The settings for the correlation plots:
相关的设置相关的图：
size The width in inches of the pdf device holding the
大小宽度英寸的PDF设备持有
fontSize The point size of the font for all the text in the
fontSize的点中的所有文本的字体大小
font The font used for all the text in the pdf version
字体的PDF版本的所有文字使用的字体
thumbFactor The factor by which the thumbnail png version of the plot is smaller compared to the
thumbFactor PNG缩图版本的图相比，较小的因素
thumbFontSize The point size of the font for all the text in the thumbnail png version of the plot. The default
thumbFontSize点PNG缩图版本的图中的所有文本的字体大小。默认
maplot The settings for the correlation plots:
maplot相关图的设置：
size The width in inches of the pdf device holding the
大小宽度英寸的PDF设备持有
fontSize The point size of the font for all the text in the
fontSize的点中的所有文本的字体大小
font The font used for all the text in the pdf version
字体的PDF版本的所有文字使用的字体
thumbFactor The factor by which the thumbnail png version of the plot is smaller compared to the
thumbFactor PNG缩图版本的图相比，较小的因素
thumbFontSize The point size of the font for all the text in the thumbnail png version of the plot. The default
thumbFontSize点PNG缩图版本的图中的所有文本的字体大小。默认
histograms The settings for the histogram plots:
直方图直方图图设置：
size The width in inches of the pdf device holding the
大小宽度英寸的PDF设备持有
fontSize The point size of the font for all the text in the
fontSize的点中的所有文本的字体大小
font The font used for all the text in the pdf version
字体的PDF版本的所有文字使用的字体
thumbFactor The factor by which the thumbnail png version of the plot is smaller compared to the
thumbFactor PNG缩图版本的图相比，较小的因素
thumbFontSize The point size of the font for all the text in the thumbnail png version of the plot. The default
thumbFontSize点PNG缩图版本的图中的所有文本的字体大小。默认
type The type of plot produced here. One in histogram or density. Both plot types have pros and cons: histograms can be misleading because of bin size artefacts, whereas density plots hide the sample
键入的图类型，这里出产的。在柱状图或密度之一。这两个图类型各有利弊：直方图可以是误导，因为斌大小文物，而密度图隐藏样品
reproducibility The settings for the reproducibility plate plots:
重复性重复性板图的设置：
size The width in inches of the pdf device holding the
大小宽度英寸的PDF设备持有
fontSize The point size of the font for all the text in the
fontSize的点中的所有文本的字体大小
font The font used for all the text in the pdf version
字体的PDF版本的所有文字使用的字体
thumbFactor The factor by which the thumbnail png version of the plot is smaller compared to the
thumbFactor PNG缩图版本的图相比，较小的因素
thumbFontSize The point size of the font for all the text in the thumbnail png version of the plot. The default
thumbFontSize点PNG缩图版本的图中的所有文本的字体大小。默认
col The color range that gets passed on to plotPlate as argument col. The default value is brewer.pal(9,
山坳传递参数plotPlatecol色彩范围。默认值是<code> brewer.pal（9，
range The data range that gets passed on to plotPlate as argument xrange. The default value is function(x) c(0, quantile(x, 0.95,
传递参数plotPlatexrange范围内的数据范围。默认值是<code>功能（X）C（0，位数（X，0.95，
include A logical indicating whether to create the
包括逻辑表示是否创建
map A logical indicating whether to tooltips containing the plate annotation for each well or not. The
映射一个逻辑说明是否含盘每口井或不标注的工具提示。 “
average The settings for the reproducibility plate plots:
平均重复性板图的设置：
size The width in inches of the pdf device holding the
大小宽度英寸的PDF设备持有
fontSize The point size of the font for all the text in the
fontSize的点中的所有文本的字体大小
font The font used for all the text in the pdf version
字体的PDF版本的所有文字使用的字体
thumbFactor The factor by which the thumbnail png version of the plot is smaller compared to the
thumbFactor PNG缩图版本的图相比，较小的因素
thumbFontSize The point size of the font for all the text in the thumbnail png version of the plot. The default
thumbFontSize点PNG缩图版本的图中的所有文本的字体大小。默认
col The color range that gets passed on to plotPlate as argument col. The default value is brewer.pal(9,
山坳传递参数plotPlatecol色彩范围。默认值是<code> brewer.pal（9，
range The data range that gets passed on to plotPlate as argument xrange. The default value is function(x) c(0, quantile(x, 0.95,
传递参数plotPlatexrange范围内的数据范围。默认值是<code>功能（X）C（0，位数（X，0.95，
include A logical indicating whether to create the
包括逻辑表示是否创建
map A logical indicating whether to tooltips containing the plate annotation for each well or not. The
映射一个逻辑说明是否含盘每口井或不标注的工具提示。 “
intensities The settings for the raw data plate plots:
强度的原始数据盘图的设置：
size The width in inches of the pdf device holding the
大小宽度英寸的PDF设备持有
fontSize The point size of the font for all the text in the
fontSize的点中的所有文本的字体大小
font The font used for all the text in the pdf version
字体的PDF版本的所有文字使用的字体
thumbFactor The factor by which the thumbnail png version of the plot is smaller compared to the
thumbFactor PNG缩图版本的图相比，较小的因素
thumbFontSize The point size of the font for all the text in the thumbnail png version of the plot. The default
thumbFontSize点PNG缩图版本的图中的所有文本的字体大小。默认
col The color range that gets passed on to plotPlate as argument col. The default
山坳传递参数plotPlatecol色彩范围。默认
range The data range that gets passed on to plotPlate as argument xrange. The default value is function(x) quantile(x, c(0.025, 0.975), na.rm = TRUE). A useful alternative setting here would be function(x) c(-1,1) * max(abs(x), na.rm=TRUE),
传递参数plotPlatexrange范围内的数据范围。默认值是function(x) quantile(x, c(0.025, 0.975), na.rm = TRUE)。一个有用的替代设置这里将是function(x) c(-1,1) * max(abs(x), na.rm=TRUE)
include A logical indicating whether to create the
包括逻辑表示是否创建
map A logical indicating whether to tooltips containing the plate annotation for each well or not. The
映射一个逻辑说明是否含盘每口井或不标注的工具提示。 “
plateConfiguration This controls settings for the plate configuration part of the report. Available settings are:
plateConfiguration控制报告板配置的一部分设置。可用的设置如下：
size The width in inches of the pdf device holding the
大小宽度英寸的PDF设备持有
fontSize The point size of the font for all the text in the
fontSize的点中的所有文本的字体大小
font The font used for all the text in the pdf version
字体的PDF版本的所有文字使用的字体
thumbFactor The factor by which the thumbnail png version of the plot is smaller compared to the
thumbFactor PNG缩图版本的图相比，较小的因素
thumbFontSize The point size of the font for all the text in the thumbnail png version of the plot. The default
thumbFontSize点PNG缩图版本的图中的所有文本的字体大小。默认
include A logical indicating whether to create the plate
包括逻辑指示是否创建板
plateSummaries This controls settings for the plate
这控制设置板plateSummaries
size The width in inches of the pdf device holding the
大小宽度英寸的PDF设备持有
fontSize The point size of the font for all the text in the
fontSize的点中的所有文本的字体大小
font The font used for all the text in the pdf version
字体的PDF版本的所有文字使用的字体
thumbFactor The factor by which the thumbnail png version of the plot is smaller compared to the
thumbFactor PNG缩图版本的图相比，较小的因素
thumbFontSize The point size of the font for all the text in the thumbnail png version of the plot. The default
thumbFontSize点PNG缩图版本的图中的所有文本的字体大小。默认
col The colors used to fill the boxes. A vector of length two, where the first item specifies the color for the raw data panel and the second item specifies the color for the normalized data panel. The default value is
比索用于填补盒的颜色。一个向量的长度为两个，其中第一项指定为原始数据面板和第二项的颜色指定为规范化的数据面板的颜色。默认值是
size The width in inches of the pdf device holding the
大小宽度英寸的PDF设备持有
fontSize The point size of the font for all the text in the
fontSize的点中的所有文本的字体大小
font The font used for all the text in the pdf version
字体的PDF版本的所有文字使用的字体
thumbFactor The factor by which the thumbnail png version of the plot is smaller compared to the
thumbFactor PNG缩图版本的图相比，较小的因素
thumbFontSize The point size of the font for all the text in the thumbnail png version of the plot. The default
thumbFontSize点PNG缩图版本的图中的所有文本的字体大小。默认
screenSummary The settings for all the plots in the screen summary section of the report. There are several sub-section:
screenSummary为屏幕的报告摘要部分中的所有图的设置。有几个小节：
scores The settings for summary screen image plots:
分数汇总屏幕图像图的设置：
size The width in inches of the pdf device holding the
大小宽度英寸的PDF设备持有
fontSize The point size of the font for all the text in the
fontSize的点中的所有文本的字体大小
font The font used for all the text in the pdf version
字体的PDF版本的所有文字使用的字体
thumbFactor The factor by which the thumbnail png version of the plot is smaller compared to the
thumbFactor PNG缩图版本的图相比，较小的因素
thumbFontSize The point size of the font for all the text in the thumbnail png version of the plot. The default
thumbFontSize点PNG缩图版本的图中的所有文本的字体大小。默认
col The color range used to map the data values into. This has to be a named list of length two, with the first item posNeg being the color range used when there are both positive and negative values, and the second item being the color range for positive values only. One usually wants the former to be centered on white to blend into the background, and the former to start from white. The default value is list(posNeg=rev(brewer.pal(11, "RdBu"))[c(1:5,
山坳的颜色范围，用于映射数据值。这第一项posNeg颜色范围内使用，当有正面和负面的价值观，和第二项的色彩范围只有正面的价值观，是一个长度为2的命名列表。人们通常要到白色为中心，以融入的背景前，和前开始从白色。默认值是<code>名单（posNeg =转速（brewer.pal（11，“RdBu”））[C（1:5，
aspect The aspect ratio of the plot. The default
图方面的宽高比。默认
annotation An alternative character vector of annotation mappings. See imageScreen for
注解注解映射的替代特征向量。看到imageScreen
map A logical indicating whether to tooltips containing the plate annotation for each well or not. The
映射一个逻辑说明是否含盘每口井或不标注的工具提示。 “
range The range of values into which the colors will
范围值到其中的颜色会范围
nbImageBins The number of color bins used in the
nbImageBins中所使用的颜色的垃圾桶数量
nbLegendBins The number of color bins shown in the
nbLegendBins颜色的垃圾桶数量显示在
qqplot The settings for the Normal Q-Q plots:
qqplot正常的Q-Q图的设置：
size The width in inches of the pdf device holding the
大小宽度英寸的PDF设备持有
fontSize The point size of the font for all the text in the
fontSize的点中的所有文本的字体大小
font The font used for all the text in the pdf version
字体的PDF版本的所有文字使用的字体
thumbFactor The factor by which the thumbnail png version of the plot is smaller compared to the
thumbFactor PNG缩图版本的图相比，较小的因素
thumbFontSize The point size of the font for all the text in the thumbnail png version of the plot. The default
thumbFontSize点PNG缩图版本的图中的所有文本的字体大小。默认
distribution The settings for the density distribution plot:
分布密度分布图的设置：
size The width in inches of the pdf device holding the
大小宽度英寸的PDF设备持有
fontSize The point size of the font for all the text in the
fontSize的点中的所有文本的字体大小
font The font used for all the text in the pdf version
字体的PDF版本的所有文字使用的字体
thumbFactor The factor by which the thumbnail png version of the plot is smaller compared to the
thumbFactor PNG缩图版本的图相比，较小的因素
thumbFontSize The point size of the font for all the text in the thumbnail png version of the plot. The default
thumbFontSize点PNG缩图版本的图中的所有文本的字体大小。默认
screenResults The settings for the screen results panel:
screenResults屏幕面板的设置：
keepFieldPattern A regular expression indicating which
keepFieldPattern一个正则表达式，表明这
htmlMaxItems The maximal number of cells in the output
在输出htmlMaxItems单元的最大数量
htmlLinks A data frame containing a plate column, a well column, followed by the columns containing the HTML hyper
htmlLinks一个数据框包含一个plate列，well列，列包含HTML超
controls The settings for the annotation of control wells and other type of wells. Currently these are only two item:
控制设置控制井井和其他类型的注释。目前，这些是只有两个项目：
col A named vector of colors to be used across all plots for the annotation of the well types. Allowed values are: sample, neg, controls, other, empty, flagged, act, inh and pos. Additional user-defined well types that don't fall in any of these groups will be assigned a color from the
所有图以及类型的注释用于颜色比索一个名为向量。允许的值有：sample，neg，controls，other，empty，flagged，act，inh。 和pos。附加的用户定义以及类型不属于任何这些团体将被分配一个从颜色
col A color palette from which colors are drawn for well
比索从颜色以及绘制调色板
controls Global report settings:
控制全球报告设置：
ppi A numeric indicating the resolution of the screen. This parameter is used to generate PNG images. Large numbers produce large PNG images. Default is 72.
ppi的一个数字显示屏幕的分辨率。此参数用于生成PNG图像。大量产生大的PNG图像。默认值是72。
值----------Value----------
The current settings for getSettings.
getSettings当前设置。
setSettings is called for its side effect of setting session-wide settings.
setSettings被称为其副作用设置会话范围的设置。
作者（S）----------Author(s)----------
Florian Hahne
参见----------See Also----------
writeReport
writeReport
举例----------Examples----------
oset <- getSettings()
oset
setSettings(list(plateConfiguration=list(size=2),
list(plateList=list(intensities=list(include=FALSE)))))
getSettings()
setSettings(oset)
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-25 14:18:45
