HyperGParams-class(Category)
HyperGParams-class()所属R语言包：Category
Class "HyperGParams"
类“HyperGParams”
译者：生物统计家园网 机器人LoveR
描述----------Description----------
An abstract (VIRTUAL) parameter class for representing all parameters needed by a method specializing the hyperGTest generic. You should only use subclasses of this class directly.
一个抽象的（虚拟）代表由专业hyperGTest通用的方法所需的所有参数的参数类。你应该只直接使用这个类的子类。
类的对象----------Objects from the Class----------
Objects of this class cannot be instantiated directly.
不能直接实例化这个类的对象。
插槽----------Slots----------
geneIds: Object of class "ANY": A vector of gene identifiers. Numeric and character vectors are probably the only things that make sense. These are the gene ids for the
geneIds：Object类的"ANY"：一个基因标识的向量。数字和字符向量可能是唯一有意义的事情。这些都为基因IDS
universeGeneIds: Object of class "ANY": A vector of gene ids in the same format as geneIds defining a subset of the gene ids on the chip that will be used as the universe for the hypergeometric calculation. If this is NULL or has length zero, then all gene ids on the chip will
universeGeneIds：对象类"ANY"：在相同的格式为geneIds基因标识的一个子集上定义的芯片将用于宇宙超几何向量的基因IDS计算。如果这是NULL或长度为零，然后在芯片上的所有基因IDS会
annotation: A string giving the name of the
annotation：一个字符串，给出的名称
categorySubsetIds: Object of class "ANY": If the test method supports it, can be used to specify a subset of category ids to include in the test instead of all possible
categorySubsetIds：Object类的"ANY"：如果测试方法支持它，可以用来指定类别ID的一个子集，包括在测试，而不是所有可能的
categoryName: A string describing the category.
categoryName：一个描述类的字符串。
pvalueCutoff: The p-value to use as a cutoff for significance for testing methods that require it. This value will also be passed on to the result instance and used for display and counting of significant results. The default is
pvalueCutoff：P-值测试方法需要它作为一个重要的截止使用。此值也将被传递到的结果实例，用于显示和计数显著成效。默认是
testDirection: A string indicating whether the test should be for overrepresentation ("over") or
testDirection：一个字符串，指示测试是否应该为比例过高（"over"）或
datPkg: Holds a DatPkg object which is of a particular type that in turn varies with the kind of annotation
datPkg：举行DatPkg的对象是特定类型的，又与不同的注释
方法----------Methods----------
hyperGTest signature(p = "HyperGParams"): Perform hypergeometric tests to assess overrepresentation of category ids in the gene set. See the documentation for the generic function for details. This method must be called with a proper subclass of
hyperGTestsignature(p = "HyperGParams")：执行超几何测试，以评估基因组中的类别ID的比例过高。看到文件的详细信息，泛型函数。此方法必须有一个适当的子类被称为
geneIds(object), geneIds(object) <- value Accessors for the gene identifiers that will be used as the selected gene
geneIds(object)，geneIds(object) <- value存取将选定的基因，该基因的标识符
codeannotation(object) Accessor for annotation. If you want to change the annotation for an existing instance, use the
codeannotation（对象）访问注解。如果你想改变现有的实例注解，使用
ontology(object) Accessor for GO ontology.
ontology(object)存取对GO本体。
value</dt> Accessor for the p-value cutoff. When setting,
值</代码> </ DT> p值截止存取。在设置时，
testDirection Accessor for the test direction. When setting,
testDirection存取的测试方向。在设置时，
universeGeneIds(r) accessor for vector of gene
universeGeneIds(r)存取基因向量
isConditional(r) Returns TRUE if the instance
isConditional(r) TRUE如果返回实例
作者（S）----------Author(s)----------
S. Falcon
参见----------See Also----------
HyperGResult-class GOHyperGParams-class KEGGHyperGParams-class geneKeggHyperGeoTest hyperGTest
HyperGResult-classGOHyperGParams-classKEGGHyperGParams-classgeneKeggHyperGeoTesthyperGTest
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
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发表于 2012-2-25 14:09:34
