ChrMapHyperGParams-class(Category)
ChrMapHyperGParams-class()所属R语言包：Category
Class "ChrMapHyperGParams"
类“ChrMapHyperGParams”
译者：生物统计家园网 机器人LoveR
描述----------Description----------
This class encapsulates parameters needed for Hypergeometric testing of over or under representation of chromosome bands among a selected gene list using hyperGTest.
这个类封装或根据选定的基因列表之间的染色体带的代表性的超几何测试所需的参数，使用hyperGTest。
类的对象----------Objects from the Class----------
Objects can be created by calls of the form new("ChrMapHyperGParams", ...).
创建对象可以通过检测的形式new("ChrMapHyperGParams", ...)。
插槽----------Slots----------
chrGraph: Object of class "graph". The nodes are the chromosome bands and the edges describe the tree structure of the bands. Each node has a "geneIds" node attributes (see nodeData) which contains a vector of gene IDs annotated at
chrGraph类"graph"的对象。节点的染色体带和边缘描述的树结构的乐队。每个节点都有一个“geneIds”节点属性（见nodeData），其中包含的基因标识向量注明
conditional: Object of class "logical", indicating whether the test performed should be a conditional
conditional：Object类的"logical"，表明测试是否应该是有条件的
geneIds: Object of class "ANY": A vector of gene identifiers. Numeric and character vectors are probably the only things that make sense. These are the gene ids for the
geneIds：Object类的"ANY"：一个基因标识的向量。数字和字符向量可能是唯一有意义的事情。这些都为基因IDS
universeGeneIds: Object of class "ANY": A vector of gene ids in the same format as geneIds defining a subset of the gene ids on the chip that will be used as the universe for the hypergeometric calculation. If this is NULL or has length zero, then all gene ids on the chip will
universeGeneIds：对象类"ANY"：在相同的格式为geneIds基因标识的一个子集上定义的芯片将用于宇宙超几何向量的基因IDS计算。如果这是NULL或长度为零，然后在芯片上的所有基因IDS会
annotation: A string giving the name of the
annotation：一个字符串，给出的名称
categorySubsetIds: Object of class "ANY": If the test method supports it, can be used to specify a subset of category ids to include in the test instead of all possible
categorySubsetIds：Object类的"ANY"：如果测试方法支持它，可以用来指定类别ID的一个子集，包括在测试，而不是所有可能的
categoryName: A string describing the category. Usually set automatically by subclasses. For example
categoryName：一个描述类的字符串。一般自动设置子类。例如
pvalueCutoff: The p-value to use as a cutoff for significance for testing methods that require it. This value will also be passed on to the result instance and used for display and
pvalueCutoff：P-值测试方法需要它作为一个重要的截止使用。此值也将被传递到的结果实例，用于显示和
testDirection: A string indicating whether the test should be for overrepresentation ("over") or
testDirection：一个字符串，指示测试是否应该为比例过高（"over"）或
datPkg: Object of class "DatPkg" used to assist
datPkg：Object类的"DatPkg"用来协助
延伸----------Extends----------
Class "HyperGParams", directly.
类"HyperGParams"，直接。
方法----------Methods----------
No methods defined with class "ChrMapHyperGParams" in the signature.
没有定义的方法与类的“ChrMapHyperGParams”签名。
作者（S）----------Author(s)----------
Seth Falcon
举例----------Examples----------
showClass("ChrMapHyperGParams")
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-25 14:06:51
