GOFrame(AnnotationDbi)
GOFrame()所属R语言包:AnnotationDbi
GOFrame and GOAllFrame objects
GOFrame和GOAllFrame对象
译者:生物统计家园网 机器人LoveR
描述----------Description----------
These objects each contain a data frame which is required to be composed of 3 columns. The 1st column are GO IDs. The second are evidence codes and the 3rd are the gene IDs that match to the GO IDs using those evidence codes. There is also a slot for the organism that these anotations pertain to.
其中的每个对象包含一个数据框,这是需要3列组成。第一列是GO的ID。第二个证据代码,第三是基因的ID相匹配的GO标识使用这些证据代码。还有一个插槽,这些anotations属于生物体。
Details
详情----------Details----------
The GOAllFrame object can only be generated from a GOFrame object and its contructor method does this automatically from a GOFrame argument. The purpose of these objects is to create a safe way for annotation data about GO from non-traditional sources to be used for analysis packages like GSEABase and eventually GOstats.
GOAllFrame对象只能从GOFrame对象和它的构造器方法生成这个自动从GOFrame参数。这些对象的目的是为来自非传统来源,可用于分析软件包像GSEABase最终GoStats上标注的数据来创建一个安全的方式。
举例----------Examples----------
## Make up an example[#一个例子]
genes = c(1,10,100)
evi = c("ND","IEA","IDA")
GOIds = c("GO:0008150","GO:0008152","GO:0001666")
frameData = data.frame(cbind(GOIds,evi,genes))
library(AnnotationDbi)
frame=GOFrame(frameData,organism="Homo sapiens")
allFrame=GOAllFrame(frame)
getGOFrameData(allFrame)
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注:
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