R语言 simco包 SimCoef()函数中文帮助文档(中英文对照)

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SimCoef(simco)
SimCoef()所属R语言包：simco

                                        A function to carry out the calculation of similarity coefficients from multiple Structure output files.
                                         一个函数来进行计算的相似系数从多个结构的输出文件。

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

This function takes multiple Structure files that have already been imported using the "SimCoImport()" function and calculates similarity coefficients for them.<br>
此功能需要多个结构文件已经被导入"SimCoImport()"使用函数和计算相似系数为<BR>。

The output is printed to the screen and includes the number of populations (K) that are assumed, the number of individuals (I), the number of Structure runs that have been analysed, the range, median, mean similariy coefficient, and standard error of the mean. Lastly, the output displays the similarity coefficients and the pairs of runs that were compared.<br>
打印输出到屏幕上，并包括人口的数目（K）的假定的个体数（Ⅰ），已经分析的数量的结构运行，的范围内，中位数，意味着similariy系数，和标准错误的意思。最后，输出显示的相似性系数和对运行进行比较。<br>物理化学学报


用法----------Usage----------


SimCoef(mydata)



参数----------Arguments----------

参数：mydata
mydata is a dataframe generated using "SimCoImport()" which is the Structure output files, appended and labelled with a capital letter.
mydata是产生一个数据框使用"SimCoImport()"这是结构的输出文件，以大写字母附加标记。


Details

详细信息----------Details----------


值----------Value----------

<table summary="R valueblock"> <tr valign="top"><td>Number of populations (K)</td> <td> The number of populations that were assumed when generating the Strucure files</td></tr> <tr valign="top"><td>Number of individuals (I)</td> <td> The number of individuals/samples in the datafile</td></tr> <tr valign="top"><td>Number of Structure runs</td> <td> The number of Structure runs that have been compared</td></tr> <tr valign="top"><td>Range</td> <td> The range of similarity coefficients</td></tr> <tr valign="top"><td>Median Similarity Coefficient</td> <td> The median similarity coefficient</td></tr> <tr valign="top"><td>Mean Similarity Coefficient</td> <td> The mean similarity coefficient</td></tr> <tr valign="top"><td>SEM of Similarity Coefficient</td> <td> The standard error of the mean similarity coefficient</td></tr> <tr valign="top"><td>The similarity coefficients</td> <td> a list of the similarity coefficients</td></tr> <tr valign="top"><td>Summary</td> <td> A table showing the pairs of runs that were compared (matches up with the list of similarity coeffiencts).</td></tr>
<table summary="R valueblock"> <tr valign="top"> <TD> Number of populations (K)</ TD> <TD>人口的数量，假设产生1.11文件</ TD> </ TR> <tr valign="top"> <TD> Number of individuals (I) </ TD> <TD>在数据文件中的个人/样本数</ TD> </ TR> <tr valign="top"> <TD> Number of Structure runs </ TD> <TD>结构运行已比较</ TD> </ TR> <tr valign="top"> <TD>Range</ td> <td>使用范围的相似性系数</ TD> </ TR> <tr valign="top"> <TD>Median Similarity Coefficient </ TD> <TD>的平均相似系数</ TD> < / TR> <tr valign="top"> <TD> Mean Similarity Coefficient </ TD> <TD>的平均相似系数</ TD> </ TR> <tr valign="top"> <TD> SEM of Similarity Coefficient</ TD> <TD>的平均相似系数的标准误差</ TD> </ TR> <tr valign="top"> <TD> The similarity coefficients</ TD> <TD>的相似性系数的列表</ TD> </ TR> <tr valign="top"> <TD> Summary</ TD> <td>一个表格，显示对运行进行了比较（相匹配与的相似度coeffiencts列表）。</ TD> </ TR>

</table>
</ TABLE>


（作者）----------Author(s)----------


Owen R. Jones (<a href="mailtowen.jones@imperial.ac.uk">owen.jones@imperial.ac.uk</a>)



参考文献----------References----------

Rebbeck, CA, Jones, OR, &amp; Tsai, IJ  (unpublished) SimCo: A program to automate the comparison of multiple structure runs (available from owen.jones@imperial.ac.uk)
Pritchard, J. K. et al. (2000) Inference of population structure using multilocus genotype data. Genetics. 155, 945-959.



参见----------See Also----------

SimCoImport structureexample
SimCoImportstructureexample


实例----------Examples----------



#You should import the files you want to use first using the SimCoImport() command.[你应该导入文件，你想使用第一次使用的SimCoImport（）命令。]
#In this example it is assumed that you are using a pre-imported dataset called "structureexample"[在本例中，假定你使用的是进口的数据集名为“structureexample”]

data(structureexample)
SimCoef(structureexample)


转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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