Drop GO labels for specified Evidence Codes
拖放去指定的证据代码标签
译者:生物统计家园网 机器人LoveR
描述----------Description----------
Genes are mapped to GO terms on the basis of evidence codes. In some analyses it will be appropriate to drop certain sets of annotations based on specific evidence codes.
基因映射去证据码的基础上的条款。在一些分析,这将是适当下降若干套根据具体证据码的注释。
用法----------Usage----------
dropECode(inlist, code="IEA")
参数----------Arguments----------
参数:inlist
A list of GO data
GO数据列表
参数:code
The set of codes that should be dropped.
应该被丢弃的一组代码。
Details
详情----------Details----------
A simple use of lapply and sapply to find and eliminate those terms that have the specified evidence codes.
一个简单的使用lapply和sapply发现和消除这些条款有指定的证据代码。
This might be used when one is using to GO to validate a sequence matching experiment (for example), then all terms whose mapping was based on sequence similarity (say ISS and IEA) should be removed.
这可能被用来当一个人去验证序列匹配试验(例如),然后其映射关系是基于序列相似性(比如国际空间站和IEA)应拆除所有条款。
值----------Value----------
A list of the same length as the input list retaining only those annotations whose evidence codes were not the ones in the exclusion set code.
一个相同的长度作为输入列表中保留这些注释的证据代码没有设置code排除的名单。
作者(S)----------Author(s)----------
R. Gentleman
参见----------See Also----------
getEvidence, getOntology
getEvidence,getOntology
举例----------Examples----------
library("hgu95av2.db")
bb <- hgu95av2GO[["39613_at"]]
getEvidence(bb[1:3])
cc <- dropECode(bb[1:3])
if (length(cc))
getEvidence(cc)