scarabee.directory(scaRabee)
scarabee.directory()所属R语言包：scaRabee
Creation of the Run Directory
创建的运行目录
译者：生物统计家园网 机器人LoveR
描述----------Description----------
scarabee.directory is a secondary function called at each scaRabee run. It creates a directory to store the results of the run and a sub-directory to backup all files used for the run. This directory is referred to as the 'run directory' in all scaRabee documentation and help. scarabee.directory is typically not called directly by users.
scarabee.directory在每一个scaRabee的run函数调用是次要的。它创建一个目录来存放运行和次目录的所有文件备份用于运行的结果。此目录被称为“运行目录中的所有scaRabee文档和帮助。 scarabee.directory通常不直接调用用户。
用法----------Usage----------
scarabee.directory(curwd = getwd(),
files = NULL,
runtype = NULL,
analysis = NULL)
参数----------Arguments----------
参数：curwd
The current working directory.
当前的工作目录。
参数：files
A list of input used for the analysis. The following elements are expected and none of them could be null:
用于分析的输入的列表。预计下列元素和他们没有可能为空：
dataA .csv file located in the working directory, which contains the dosing information, the observations of the dependent variable(s) to be modeled, and possibly covariate information. The expected format of this file is described in details in vignette('scaRabee', package='scaRabee').
DATAA。csv文件的工作目录，其中包含的剂量信息，（因变量）的意见进行建模，以及可能的协变量的信息。该文件格式的细节vignette('scaRabee', package='scaRabee')。
paramA .csv file located in the working directory, which contains the initial guess(es) for the model parameter(s) to be optimized or used for model simulation. The expected format of this file is described in details in vignette('scaRabee',package='scaRabee').
帕拉马。csv文件的工作目录，其中包含了最初的猜测（ES）进行优化或用于模型仿真模型参数（S）。该文件格式的细节vignette('scaRabee',package='scaRabee')。
modelA text file located in the working directory, which defines the model. Models specified with explicit, ordinary or delay differential equations are expected to respect a certain syntax and organization detailed in vignette('scaRabee',package='scaRabee').
MODELA工作目录中的文本文件，它定义了模型。指定明确的，普通或延迟微分方程模型应尊重一定的语法和组织中详述vignette('scaRabee',package='scaRabee')。
iterA .csv file reporting the values of the objective function and estimates of model parameters at each iteration. (Not used for simulation runs).
迭代。csv文件报告在每次迭代的目标函数和模型参数的估计值。 （不用于模拟运行）。
reportA text file reporting for each individual in the dataset the final parameter estimates for structural model parameters, residual variability and secondary parameters as well as the related statistics (coefficients of variation, confidence intervals, covariance and correlation matrix). (Not used for simulation runs).
reportA文本文件报告为每个数据集的结构模型参数，剩余的可变性和次要参数以及相关的统计数据（系数的变化，置信区间，协方差和相关矩阵）的最后一个参数估计。 （不用于模拟运行）。
predA .csv file reporting the predictions and calculated residuals for each individual in the dataset. (Not used for simulation runs).
报告的预测和计算残差的每一个人在该数据集的捕食者。csv文件。 （不用于模拟运行）。
estA .csv file reporting the final parameter estimates for each individual in the dataset. (Not used for simulation runs).
ESTA。csv文件，报告的最后一个参数估计为每个数据集。 （不用于模拟运行）。
simA .csv file reporting the simulated model predictions for each individual in the dataset. (Not used for estimation runs).
司马。csv文件报告为每个数据集模拟模型的预测结果。 （不用于估计运行）。
参数：runtype
A character string, indicating the type of analysis. Should be 'simulation', 'estimation', or 'gridsearch'.
一个字符串，表示的分析的类型。应该是“模拟”，“估计”，或“gridsearch”。
参数：analysis
A character string directly following the $ANALYSIS tag in the model file.
一个字符串直接在模型文件后，分析标签。
值----------Value----------
When scarabee.directory is called, a new folder is created in the working directory. The name of the new folder is a combination of the string directly following the $ANALYSIS tag in the model file, an abbreviation of the type of run ('est' for estimation, 'sim' for simulation, or 'grid' for grid search) and an incremental integer, e.g. 'test.est.01'. This directory contains the text and graph outputs of the run.
当scarabee.directory被调用时，一个新的文件夹中创建的工作目录。新的文件夹的名称是一个组合的字符串后，分析标签在模型文件中，运行的类型的缩写（美国东部时间估计，模拟的“SIM卡”，或“网格”网格搜索）和增量的整数，例如test.est.01。该目录包含了文本和图形输出的运行。
Additionally, a sub-directory called run.config.files is created into the new folder and all the files defining the run, i.e. the dataset, the file of initial model parameters, the model file and the master R script), are stored.
此外，子称为run.config.files的目录到新文件夹中创建的所有文件定义的运行，即数据集，该文件的初始模型参数，模型文件和的R脚本大师），存储。
（作者）----------Author(s)----------
Sebastien Bihorel (<a href="mailto:sb.pmlab@gmail.com">sb.pmlab@gmail.com</a>)
参见----------See Also----------
scarabee.analysis
scarabee.analysis
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-9-29 22:47:44
