R语言 ACME包 ACMECalcSet-class()函数中文帮助文档(中英文对照)

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ACMECalcSet-class(ACME)
ACMECalcSet-class()所属R语言包：ACME

                                        Class "ACMECalcSet"
                                         类“ACMECalcSet”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

A subclass of ACMESet that can also store the
一个ACMESet子类，也可以存储


类的对象----------Objects from the Class----------

Objects can be created by calls of the form new("ACMECalcSet",   assayData, phenoData, featureData, experimentData, annotation,   cutpoints, threshold, exprs, vals, ...).  In addition to the constraints defined by ACMESet, this class can also hold the results (in the assayDataElement vals) and the
创建对象可以通过检测的形式new("ACMECalcSet",   assayData, phenoData, featureData, experimentData, annotation,   cutpoints, threshold, exprs, vals, ...)。这个类除了由ACMESet定义的约束，也可以按住结果的assayDataElement vals


插槽----------Slots----------




cutpoints: Object of class "numeric" The values
cutpoints类"numeric"值的对象




threshold: Object of class "numeric" The
threshold类"numeric"：对象




assayData: Object of class "AssayData".  See
assayData类"AssayData"的对象。见




phenoData: Object of class "AnnotatedDataFrame" See
phenoData：Object类的"AnnotatedDataFrame"见




featureData: Object of class "AnnotatedDataFrame" See
featureData：Object类的"AnnotatedDataFrame"见




experimentData: Object of class "MIAME" See
experimentData：Object类的"MIAME"见




annotation: Object of class "character" See
annotation：Object类的"character"见




.__classVersion__: Object of class "Versions" See
.__classVersion__：Object类的"Versions"见


延伸----------Extends----------

Class "ACMESet", directly. Class "ExpressionSet", by class "ACMESet", distance 2. Class "eSet", by class "ACMESet", distance 3. Class "VersionedBiobase", by class "ACMESet", distance 4. Class "Versioned", by class "ACMESet", distance 5.
类"ACMESet"，直接。类"ExpressionSet"，由类“ACMESet”，距离为2。类"eSet"，由类“ACMESet”，距离3。类"VersionedBiobase"，由类“ACMESet”，距离4。类"Versioned"，由类“ACMESet”，距离5。


方法----------Methods----------




cutpoints signature(x = "ACMECalcSet"): A simple
切点signature(x = "ACMECalcSet")：一个简单的




plot signature(x = "ACMECalcSet"): A convenience
图signature(x = "ACMECalcSet")：方便




show signature(object = "ACMECalcSet"): A show method
显示signature(object = "ACMECalcSet")：一个show方法




threshold signature(x = "ACMECalcSet"): A simple
阈值signature(x = "ACMECalcSet")：一个简单的




vals signature(x = "ACMECalcSet"): an accessor for the p-values from a run of do.aGFF.calc.  Returns a matrix with samples
的丘壑signature(x = "ACMECalcSet")：从运行do.aGFF.calc p值的存取。返回样本矩阵


作者（S）----------Author(s)----------


Sean Davis <sdavis2@mail.nih.gov>



参见----------See Also----------

ACMESet
ACMESet


举例----------Examples----------


showClass("ACMECalcSet")
data(example.agff)
b <- do.aGFF.calc(example.agff,thresh=0.95,window=1000)
b
head(vals(b))
threshold(b)
cutpoints(b)

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