R语言 splicegear包 SpliceSitesGenomic-class()函数中文帮助文档(中英文对照)

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SpliceSitesGenomic-class(splicegear)
SpliceSitesGenomic-class()所属R语言包：splicegear

                                        Class "SpliceSitesGenomic"
                                         类“SpliceSitesGenomic”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

A class to store alternative splicing information on a genomic point of view.
A类剪接信息储存在基因组点的观点。


类的对象----------Objects from the Class----------

Objects can be created by calls of the form new("SpliceSitesGenomic", seq, seq.length, spsiteIpos, spsiteIIpos, spsiteIIIpos, spsiteIpos.pData, spsiteIIpos.pData, spsiteIIIpos.pData, ...).
创建对象可以通过检测的形式new("SpliceSitesGenomic", seq, seq.length, spsiteIpos, spsiteIIpos, spsiteIIIpos, spsiteIpos.pData, spsiteIIpos.pData, spsiteIIIpos.pData, ...)。


插槽----------Slots----------




variants: Object of class "list". There is one element per splice variant. Each element in the list should be a vector of integers. Each integer refers to an exon. The sequence
variants类"list"的对象。有剪接变异体的每一个元素。在列表中的每个元素应该是一个整数的向量。每个整数是指一个外显子。序列




seq: Object of class "character", from class "SpliceSites".
seq类"character", from class "SpliceSites"的对象。




seq.length: Object of class "integer", from class "SpliceSites".
seq.length类"integer", from class "SpliceSites"的对象。




spsiteIpos: Object of class "matrix", from class "SpliceSites".
spsiteIpos类"matrix", from class "SpliceSites"的对象。




spsiteIIpos: Object of class "integer", from
spsiteIIpos：对象类的<code>“整数”，




spsiteIIIpos: Object of class "matrix", from
spsiteIIIpos：对象类的<code>“矩阵”，从




spsiteIpos.pData: Object of class "AnnotatedDataFrame", from class "SpliceSites".
spsiteIpos.pData类"AnnotatedDataFrame", from class "SpliceSites"的对象。




spsiteIIpos.pData: Object of class "AnnotatedDataFrame",
spsiteIIpos.pData：对象类的<code>“AnnotatedDataFrame”




spsiteIIIpos.pData: Object of class "AnnotatedDataFrame",
spsiteIIIpos.pData：对象类的<code>“AnnotatedDataFrame”


延伸----------Extends----------

Class "SpliceSites", directly.
类"SpliceSites"，直接。


方法----------Methods----------




plot signature(x = "SpliceSitesGenomic", y =
图的<code>签名（X =的“SpliceSitesGenomic”，Y =


参见----------See Also----------

SpliceSites-class and plot.SpliceSitesGenomic.
SpliceSites-class和plot.SpliceSitesGenomic。


举例----------Examples----------


## a 10 bp window[＃10 bp的窗口]
seq.length <- as.integer(10)
## positions of the exons[＃的外显子的位置]
spsiteIpos <- matrix(c(1, 3.5, 5, 9, 3, 4, 8, 10), nc=2)
## known variants[＃已知变种]
variants <- list(a=c(1,2,3,4), b=c(1,2,3), c=c(1,3,4))

spvar <- new("SpliceSitesGenomic", spsiteIpos=spsiteIpos,
         variants=variants, seq.length=seq.length)

plot(spvar)

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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