ebamControl(siggenes)
ebamControl()所属R语言包：siggenes
Further EBAM Arguments
了进一步EBAM参数
译者：生物统计家园网 机器人LoveR
描述----------Description----------
Specifies most of the optional arguments of ebam and find.a0.
指定ebam和find.a0最可选参数。
用法----------Usage----------
ebamControl(p0 = NA, p0.estimation = c("splines", "interval", "adhoc"),
lambda = NULL, ncs.value = "max", use.weights = FALSE)
find.a0Control(p0.estimation = c("splines", "adhoc", "interval"),
lambda = NULL, ncs.value = "max", use.weights = FALSE,
n.chunk = 5, n.interval = 139, df.ratio = NULL)
参数----------Arguments----------
参数：p0
a numeric value specifying the prior probability p0 that a gene is not differentially expressed. If NA, p0 will be estimated automatically.
数值指定先验概率p0，没有差异表达的基因。如果NA，p0将估计自动。
参数：p0.estimation
either "splines" (default), "interval", or "adhoc". If "splines", the spline based method of Storey and Tibshirani (2003) is used to estimate p0. If "adhoc" ("interval"), the adhoc (interval based) method proposed by Efron et al.\ (2001) is used to estimate p0.
要么"splines"（默认），"interval"或"adhoc"。如果"splines"，样条层和Tibshirani（2003年）是用来估计p0的方法。如果"adhoc"（"interval"），埃弗龙等人提出的ADHOC（基于时间间隔）的方法。\（2001年）被用来估计p0。
参数：lambda
a numeric vector or value specifying the lambda values used in the estimation of p0. If NULL, lambda is set to seq(0, 0.95, 0.05) if p0.estimation = "splines", and to 0.5 if p0.estimation = "interval". Ignored if p0.estimation = "adhoc". For details, see pi0.est.
数字矢量值，该值指定lambda的值在p0估计使用。如果NULL，lambda设置为seq(0, 0.95, 0.05)如果p0.estimation = "splines"，0.5如果p0.estimation = "interval"。如果p0.estimation = "adhoc"忽略。有关详细信息，请参阅pi0.est。
参数：ncs.value
a character string. Only used if p0.estimation = "splines" and lambda is a vector. Either "max" or "paper". For details, see pi0.est.
一个字符串。仅用于p0.estimation = "splines"和lambda是一个向量。要么"max"或"paper"。有关详细信息，请参阅pi0.est。
参数：use.weights
should weights be used in the spline based estimation of p0? If TRUE, 1 - lambda is used as weights. For details, see pi0.est.
应被用来在基于样条p0估计重量吗？如果TRUE， - lambda的作为权。有关详细信息，请参阅pi0.est。
参数：n.chunk
an integer specifying in how many subsets the B permutations should be split when computing the permuted test scores.
一个整数，指定在多少子集B排列时，应分别计算置换的测试成绩。
参数：n.interval
the number of intervals used in the logistic regression with repeated observations for estimating the ratio f0/f.
logistic回归估计比例f0/f用反复观察的间隔数。
参数：df.ratio
integer specifying the degrees of freedom of the natural cubic spline used in the logistic regression with repeated observations.
整数，指定立方米用于在反复观察的logistic回归自然样条的自由程度。
Details
详情----------Details----------
These parameters should only be changed if they are fully understood.
这些参数只应改变，如果他们有充分的了解。
值----------Value----------
A list containing the values of the parameters that are used in ebam or find.a0, respectively.
一个列表，其中包含的是ebam或find.a0，分别使用的参数值。
作者（S）----------Author(s)----------
Holger Schwender, <a href="mailto:holger.schwender@udo.edu">holger.schwender@udo.edu</a>
参考文献----------References----------
of a Microarray Experiment. JASA, 96, 1151-1160.
Studies. Proceedings of the National Academy of Sciences, 100, 9440-9445.
参见----------See Also----------
limma2ebam, ebam, find.a0
limma2ebam，ebam，find.a0
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
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发表于 2012-2-26 14:11:55
