R语言 ShortRead包 SRSet-class()函数中文帮助文档(中英文对照)

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SRSet-class(ShortRead)
SRSet-class()所属R语言包：ShortRead

                                        A base class for Roche experiment-wide data
                                         一个罗氏范围内的实验数据的基础类

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

This class coordinates phenotype (sample) and sequence data, primarily as used on the Roche platform.
这一类的坐标型（样品）和序列数据，主要是由于采用上罗氏平台。

Conceptually, this class has reads from a single experiment represented as a long vector, ordered by sample. The readCount slot indicates the number of reads in each sample, so that the sum of readCount is the total number of reads in the experiment. The readIndex field is a light-weight indicator of which reads from all those available that are currently referenced by the SRSet.
从概念上讲，这个类读取从一个单一的实验样品订购，作为一项术语的向量表示。 readCount槽表示读取每个样品的数量，使readCount总和是在实验中读取总数。 readIndex领域，是一种重量轻的指标，从所有这些，目前正在由SRSet引用可读取。


类的对象----------Objects from the Class----------

Objects of this class are not usually created directly, but instead are created by a derived class, e.g., RocheSet.
这个类的对象通常不会直接创建的，而是由一个派生类，例如，RocheSet创建。


插槽----------Slots----------




sourcePath: Object of class "ExperimentPath",
sourcePath：Object类的"ExperimentPath"，




readIndex: Object of class "integer" indicating
readIndex：Object类的"integer"说明




readCount: Object of class "integer" containing the number of reads in each sample included in the experiment. The
readCount：Object类的"integer"包含在实验中包含的每个样品的数量在读取。 “




phenoData: Object of class "AnnotatedDataFrame" describing each sample in the experiment. The number of rows of phenoData equals the number of elements in
phenoData：Object类的"AnnotatedDataFrame"描述在每个实验样本。 phenoData行数等于元素的数目




readData: Object of class "AnnotatedDataFrame"
readData类"AnnotatedDataFrame"：对象


延伸----------Extends----------

Class ".ShortReadBase", directly.
类".ShortReadBase"，直接。


方法----------Methods----------




experimentPath signature(object = "SRSet"): return the
experimentPathsignature(object = "SRSet")：返回




phenoData signature(object = "SRSet"): return the
phenoDatasignature(object = "SRSet")：返回




readCount signature(object="SRSet"):
readCountsignature(object="SRSet")：




readIndex signature(object="SRSet"):
readIndexsignature(object="SRSet")：




readData signature(object="SRSet"):
readDatasignature(object="SRSet")：




sourcePath signature(object="SRSet"): Retrieve the
源路径signature(object="SRSet")：检索




show signature(object = "SRSet"): display the contents
显示signature(object = "SRSet")：显示内容




detail signature(x = "SRSet"): provide more
详细signature(x = "SRSet")：提供更多的


作者（S）----------Author(s)----------


Michael Lawrence <mflawrence@fhcrc.org>



举例----------Examples----------


showClass("SRSet")

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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