R语言 ShortRead包 SolexaIntensity-class()函数中文帮助文档(中英文对照)

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SolexaIntensity-class(ShortRead)
SolexaIntensity-class()所属R语言包：ShortRead

                                        Classes "SolexaIntensity" and "SolexaIntensityInfo"
                                         类“SolexaIntensity的”和“SolexaIntensityInfo”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

Instances of Intensity and IntensityInfo for representing image intensity data from Solexa experiments.
实例Intensity和IntensityInfo代表公司Solexa实验的图像强度数据。


类的对象----------Objects from the Class----------

Objects can be created by calls to SolexaIntensityInfo or SolexaIntensity, or more usually readIntensities.
可以创建由调用SolexaIntensityInfo或SolexaIntensity，或者更通常是readIntensities的对象。


插槽----------Slots----------

Object of SolexaIntensity have slots:
SolexaIntensity对象插槽：




readInfo: Object of class "SolexaIntensityInfo"
readInfo类"SolexaIntensityInfo"：对象




intensity: Object of class "ArrayIntensity" containing an array of intensities with dimensions read, base, and
intensity：Object类的"ArrayIntensity"含有阵列的强度与尺寸读的基础上，




measurementError: Object of class "ArrayIntensity" containing measurement errors for each read, cycle, and base, with dimensions like that for
measurementError：Object类的"ArrayIntensity"这样的尺寸，包含测量误差为每个读周期，碱基




.hasMeasurementError: Object of class "ScalarLogical" used internally to indicate whether
.hasMeasurementError：Object类的"ScalarLogical"内部使用，以表明是否

Object of SolexaIntensityInfo
对象SolexaIntensityInfo




data Object of class "data.frame", inherited from
数据类Object "data.frame"，继承




varMetadata Object of class "data.frame", inherited
varMetadata Object类的"data.frame"，继承




dimLabels Object of class "character", inherited
dimLabels Object类的"character"，继承




.__classVersion__ Object of class "Versions",
.__classVersion__Object类的"Versions"，




.init Object of class "ScalarLogical", used internally
类的初始化对象。"ScalarLogical"，内部使用


延伸----------Extends----------

Class SolexaIntensity:
类SolexaIntensity：

Class "Intensity", directly. Class ".ShortReadBase", by class "Intensity", distance 2.
类"Intensity"，直接。类".ShortReadBase"，由类“强度”，距离为2。

Class SolexaIntensityInfo:
类SolexaIntensityInfo：

Class "AnnotatedDataFrame", directly Class "IntensityInfo", directly Class "Versioned", by class "AnnotatedDataFrame", distance 2 Class ".ShortReadBase", by class "IntensityInfo", distance 2  Class "IntensityInfo", directly.
类"AnnotatedDataFrame"，直接类"IntensityInfo"，直接类"Versioned"类的“AnnotatedDataFrame”，距离2级".ShortReadBase"，类“IntensityInfo的”，距离2类 "IntensityInfo"，直接。


方法----------Methods----------

Class "SolexaIntensity" inherits accessor and display methods from class Intensity. Additional methods include:
类“SolexaIntensity”继承类Intensity存取和显示方法。其他方法包括：




[ signature(x = "SolexaIntensity", i="ANY", j="ANY", k="ANY"):
[signature(x = "SolexaIntensity", i="ANY", j="ANY", k="ANY")：

Selects the ith read, jth nucleotide, and kth cycle. Selection is coordinated across intensity, measurement error, and read
选择读第i，j个核苷酸，与第k个周期。选择是协调跨强度，测量误差，并阅读

Class "SolexaIntensityInfo" inherits accessor, subsetting, and display methods from class IntensityInfo and AnnotatedDataFrame.
类“SolexaIntensityInfo”的继承存取，子集，从类IntensityInfo和AnnotatedDataFrame显示方法。


作者（S）----------Author(s)----------


Martin Morgan <mtmorgan@fhcrc.org>



参见----------See Also----------

readIntensities
readIntensities


举例----------Examples----------


showClass("SolexaIntensity")
sp <- SolexaPath(system.file('extdata', package='ShortRead'))
int <- readIntensities(sp)
int                                 # SolexaIntensity[SolexaIntensity]
readInfo(int)                        # SolexaIntensityInfo[SolexaIntensityInfo]
int[1:5,,]                        # read 1:5[读1:5]

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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