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R语言 segmentSeq包 lociData-class()函数中文帮助文档(中英文对照)

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发表于 2012-2-26 14:00:13 | 显示全部楼层 |阅读模式
lociData-class(segmentSeq)
lociData-class()所属R语言包:segmentSeq

                                        Class "lociData"
                                         类“lociData”

                                         译者:生物统计家园网 机器人LoveR

描述----------Description----------

The lociData class is based on the lociData class defined in the "baySeq" package, but includes a "coordinates" slot giving the coordinates of genomic loci and a "locLikelihoods" slot which contains the estimated likelihoods that each annotated region is a locus in each replicate group and a coordinates structure giving the locations of the loci.
lociData类lociData在“baySeq包定义的类的基础上,但包括一个坐标的插槽,给人的基因位点的坐标和1locLikelihoods的插槽,其中包含估计似然性,每个注解的区域是在每个复制组和给予的基因位点的位置座标结构的轨迹。


插槽----------Slots----------




locLikelihoods: Object of class "matrix" describing estimated likelihoods that each region defined in
locLikelihoods类"matrix"估计似然性描述的对象,每个区域定义




coordinates: Object of class "GRanges" defining
coordinates:Object类的"GRanges"定义




data: Object of class "matrix" defining count
data:Object类的"matrix"定义计数




replicates: Object of class "factor" defining
replicates:Object类的"factor"定义




libsizes: Object of class "numeric" describing
libsizes:Object类的"numeric"描述




groups: Object of class "list" defing the group (model) structure of the data (see the
groups:Object类的"list"的defing组(模型)的数据结构(见

.





annotation: Object of class "data.frame" giving
annotation:Object类的"data.frame"给予




priorType: Object of class "character"
priorType类"character":对象




priors: Object of class "list" defing the prior parameter information. Calculated by
priors类"list"defing之前的参数信息的对象。计算




posteriors: Object of class "matrix" giving the estimated posterior likelihoods for each replicate group. Calculated by
posteriors:Object类的"matrix"给每个复制组后的估计似然性。计算




nullPosts: Object of class "numeric" which, if calculated, defines the posterior likelihoods for the data having no true expression of any kind. Calculated by
nullPosts类"numeric",如果计算,定义的数据没有任何形式的真实表达后似然性的对象。计算




estProps: Object of class "numeric" giving the estimated proportion of tags belonnging to each group. Calculated by
estProps:Object类的"numeric"标签belonnging到每个组的估计比例。计算




seglens: Object of class "matrix" defining the lengths of each segment containing the counts described in the
seglens类"matrix"定义各段的长度,包含计数的对象中所述


延伸----------Extends----------

Class "lociData", directly.
类"lociData",直接。


Details

详情----------Details----------

The seglens slot describes, for each row of the data object, the length of the segment that contains the number of counts described by that row. For example, if we are looking at the number of hits matching genes, the seglens object would consist of transcript lengths. Exceptionally, we may want to use different segment lengths for different samples and so the slot takes the form of a matrix. If the matrix has only one column, it is duplicated for all samples. Otherwise, it should have the same number of columns as the 'data' slot. If the slot is the empty matrix, then it is assumed that all segments have the same length.
seglens插槽介绍,为data对象,该段包含该行所描述的数量计数长度的每一行。例如,如果我们都在寻找匹配基因的命中数量,seglens对象将包括转录长度。在特殊情况下,我们可能要使用不同样品的不同段长度等插槽采用矩阵形式。如果矩阵只有一列,它是对所有样品重复。否则,它应该有相同数量的列的数据插槽。如果插槽是空的矩阵,那么它假设所有段具有相同的长度。


方法----------Methods----------

Methods "new", "dim", "[" and "show" have been defined for this class.
方法新的dim,[和显示已为这个类的定义。


作者(S)----------Author(s)----------


Thomas J. Hardcastle

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注:
注1:为了方便大家学习,本文档为生物统计家园网机器人LoveR翻译而成,仅供个人R语言学习参考使用,生物统计家园保留版权。
注2:由于是机器人自动翻译,难免有不准确之处,使用时仔细对照中、英文内容进行反复理解,可以帮助R语言的学习。
注3:如遇到不准确之处,请在本贴的后面进行回帖,我们会逐渐进行修订。
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