An initiation function to generate graph statistics
一个启动功能,生成图表统计
译者:生物统计家园网 机器人LoveR
描述----------Description----------
This function takes an in silico interactome and a list of Y2H experimental data (see details) and generates various graph summary statistics.
此功能需要在硅片相互作用组和酵母双杂交实验数据列表(见详情),并生成各种图表汇总统计。
用法----------Usage----------
graphSumStats(ISI, bait2PreyL)
参数----------Arguments----------
参数:ISI
An incidence matrix representation of a bi-partite graph of an in silico interactome
一个硅片相互作用组的双向三方在图的关联矩阵表示
参数:bait2PreyL
A list of y2h information. The data structure is that of intactInfo.rda of the y2hStat package
列表一个Y2H信息。数据结构是intactInfo.rda的y2hStat包
值----------Value----------
参数:complex
A character vector of the constituent members of the proteinn complex of interest
一个成员的利益proteinn复杂的特征向量
参数:complexBait
A character vector of those protein members which were also tested as baits in the y2h experiment
这些蛋白质成员的一个特征向量也Y2H实验测试为诱饵
参数:notBait
A character vector of those protein members which were not tested as baits
一个不作为诱饵测试这些蛋白质成员的特征向量
参数:avgDegOut
The average out-degree of the bait proteins of the complex of interest
平均出度复杂的利益诱饵蛋白
参数:notIsolated
A character vector of proteins that showed experimental binary affiliation for some other complex member
实验表明一些复杂的其他成员二进制联系的一种蛋白质的特征向量
参数:y2hGraph
An instance of the class graph; a graphNEL induceds Y2H graph on the protein complex
一个类图的实例; graphNEL induceds的Y2H对蛋白质复杂的图形
参数:popMeanDegree
The population mean degree derived from the bait proteins
来自诱饵蛋白的人口平均程度
参数:edgeProp
The estimated edge proportions derived between undirected Y2H edges
估计边缘之间无向的Y2H边缘的比例
参数:degBait
A named list; each name corresponds to each member of the protein complex with the entry the number of proteins to which it is adjacent
命名名单;条目,每个名字对应的蛋白复合物的每个成员的蛋白质的数量,它是相邻