RNAinteract-class(RNAinteract)
RNAinteract-class()所属R语言包：RNAinteract
Class "RNAinteract"
类“RNAinteract”
译者：生物统计家园网 机器人LoveR
描述----------Description----------
A class for double perturbation experiments (genetic interaction screens, drug-drug interaction screens). There are functions for creation, analysis, and display of interaction screens.
一类双扰动实验（遗传相互作用屏幕，药物相互作用屏幕）。有创造，分析和互动屏幕显示功能。
类的对象----------Objects from the Class----------
Objects can be created by calls of createRNAinteractFromFiles. See vignette("RNAinteract") for an example of creating an RNAinteract object.
对象可以创建检测createRNAinteractFromFiles。暗角（“RNAinteract”）创建一个RNAinteract对象的一个例子。
插槽----------Slots----------
data: Object of class "array" with dimension sgi@F x sgi@S x sgi@C. The raw data of the screen.
data：类维"array"sgi@F x sgi@S x sgi@C对象。在屏幕的原始数据。
screenNames: Object of class "character" with length sgi@S.
screenNames：类长度"character"sgi@S对象。
channelNames: Object of class "character" with length sgi@C.
channelNames：类长度"character"sgi@C对象。
well: Object of class "character" with length sgi@F. Well name (e.g. F04) for each measurement.
well：类长度"character"sgi@F对象。每个测量以及名称（如F04的）。
plate: Object of class "integer" with length sgi@F. Number of the plate for each measurement
plate：类长度"integer"sgi@F对象。每个测量板的数量
pdim: Object of class "integer" of length 2. Plate dimensions.
pdim：类长度为2"integer"对象。板尺寸。
NT: Object of class "integer" of length 1. Number of template reagents.
NT类"integer"长度为1的对象。模板试剂。
NQ: Object of class "integer" of length 1. Number of query reagents.
NQ类"integer"长度为1的对象。查询试剂的数量。
C: Object of class "integer" of length 1. Number of readout channels.
C类"integer"长度为1的对象。数读数渠道。
S: Object of class "integer" of length 1. Number of screens.
S类"integer"长度为1的对象。屏幕的数量。
F: Object of class "integer" of length 1. Number of measurements or single experiments per screen.
F类"integer"长度为1的对象。每屏的测量或单一实验的数量。
reagents: Object of class "data.frame" describing each reagents. Obligatory columns: RID and TID.
reagents类"data.frame"描述每个试剂的对象。强制性列：RID和TID。
targets: Object of class "data.frame" describing each target gene. Obligatory columns: TID, Symbol, group, GID.
targets类"data.frame"描述每个靶基因的对象。强制性列：TID，Symbol，group，GID。
templateDesign: Object of class "data.frame" with sgi@NT rows describing the template design. Obligatory columns: TemplatePlate, Well, RID, QueryNr.
templateDesign：Object类的"data.frame"sgi@NT行描述的模板设计。强制性列：TemplatePlate，Well，RID，QueryNr。
queryDesign: Object of class "data.frame" with sgi@NQ rows describing the query design. Obligatory columns: Plate, TemplatePlate, QueryNr, RID.
queryDesign：Object类的"data.frame"sgi@NQ行描述的查询设计。强制性列：Plate，TemplatePlate，QueryNr，RID。
transformation: Object of class "character" of length sgi@C. The transformation applied to the input data.
transformation：类长度"character"sgi@C对象。转化应用到输入数据。
mainTemplate: Object of class "array" with dimension sgi@NT x sgi@S x sgi@C. The main effect of the template reagents.
mainTemplate：类维"array"sgi@NT x sgi@S x sgi@C对象。模板试剂的主要作用。
mainQuery: Object of class "array" with dimension sgi@NQ x sgi@S x sgi@C. The main effect of the query reagents.
mainQuery：类维"array"sgi@NQ x sgi@S x sgi@C对象。查询试剂的主要作用。
mainSderrTemplate: Object of class "array" with dimension sgi@NT x sgi@S x sgi@C. The standard error of the main effect of the template reagents.
mainSderrTemplate：类维"array"sgi@NT x sgi@S x sgi@C对象。模板的试剂的主要影响的标准错误。
mainSderrQuery: Object of class "array" with dimension sgi@NQ x sgi@S x sgi@C. The standard error of the main effect of the query reagents.
mainSderrQuery：类维"array"sgi@NQ x sgi@S x sgi@C对象。查询试剂的主要效果的标准错误。
mainSdTemplate: Object of class "array" with dimension sgi@NQ x sgi@S x sgi@C. The standard deviation of the main effect of the query reagents.
mainSdTemplate：类维"array"sgi@NQ x sgi@S x sgi@C对象。查询试剂的主要效果的标准偏差。
mainSdQuery: Object of class "array" with dimension sgi@NQ x sgi@S x sgi@C. The standard deviation of the main effect of the query reagents.
mainSdQuery：类维"array"sgi@NQ x sgi@S x sgi@C对象。查询试剂的主要效果的标准偏差。
mainTimeEffect: Object of class "array" with dimension sgi@NQ x sgi@S x sgi@C. The systematic changes of the query main effects, e.g. decreasing cell number over time.
mainTimeEffect：类维"array"sgi@NQ x sgi@S x sgi@C对象。查询的主要影响系统的变化，例如随着时间的推移降低单元数量。
mainSpatialEffect: Object of class "array" with dimension sgi@F x sgi@S x sgi@C. The systematic spatial plate effects.
mainSpatialEffect：类维"array"sgi@F x sgi@S x sgi@C对象。系统空间的板块效应。
mainSpatialEffectRow: Object of class "array". Spatial effects per row (as computed by Bscore).
mainSpatialEffectRow类"array"的对象。每行的空间效果（计算Bscore）。
mainSpatialEffectCol: Object of class "array". Spatial effects per column (as computed by Bscore).
mainSpatialEffectCol类"array"的对象。每列的空间的影响（计算Bscore）。
mainNeg: Object of class "array" with dimension sgi@S x sgi@C. The main effect of the negative control.
mainNeg：类维"array"sgi@S x sgi@C对象。阴性对照组的主要作用。
mainNegTemplate: Object of class "array" with dimension sgi@S x sgi@C. The template main effect of the negative control.
mainNegTemplate：类维"array"sgi@S x sgi@C对象。阴性对照模板的主要作用。
mainNegQuery: Object of class "array" with dimension sgi@S x sgi@C. The query main effect of the negative control.
mainNegQuery：类维"array"sgi@S x sgi@C对象。阴性对照查询的主要作用。
data2mainTemplate: Object of class "integer" with dimension sgi@F. Mapping of single experiments to template reagents.
data2mainTemplate：类维"integer"sgi@F对象。映射到单个的实验模板试剂。
data2mainQuery: Object of class "integer" with dimension sgi@F. Mapping of single experiments to query reagents.
data2mainQuery：类维"integer"sgi@F对象。单一实验映射到查询试剂。
ni.model: Object of class "array" with dimension sgi@F x sgi@S x sgi@C. The expected values of the non-interacting model.
ni.model：类维"array"sgi@F x sgi@S x sgi@C对象。非相互作用模型的预期值。
pi: Object of class "array" with dimension sgi@F x sgi@S x sgi@C. The pairwise interaction score.
pi：类维"array"sgi@F x sgi@S x sgi@C对象。成对相互作用得分。
plateeffect: Object of class "array".
plateeffect类"array"的对象。
p.value: Object of class "array" with dimension sgi@NT x sgi@NQ x sgi@S x sgi@C describing the p.values.
p.value：Object类的"array"维sgi@NT x sgi@NQ x sgi@S x sgi@C描述p.values。
q.value: Object of class "array" with dimension sgi@NT x sgi@NQ x sgi@S x sgi@C describing the q.values.
q.value：Object类的"array"维sgi@NT x sgi@NQ x sgi@S x sgi@C描述q.values。
方法----------Methods----------
show signature(object = "RNAinteract"): ...
显示signature(object = "RNAinteract")：...
作者（S）----------Author(s)----------
Bernd Fischer
参见----------See Also----------
RNAinteract-package
RNAinteract-package
举例----------Examples----------
showClass("RNAinteract")
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
|
发表于 2012-2-26 13:07:26
