Convert a NimbleScan ftr-file into a xys-file
XYS的文件转换成1 NimbleScan FTR文件
译者:生物统计家园网 机器人LoveR
描述----------Description----------
Auxiliary function to convert a NimbleScan feature-report file into a xys-file that can be used with the function read.xysfiles of package oligo.
辅助功能转换1 NimbleScanfeature-report file到XYS文件可以使用功能read.xysfiles包oligo。
用法----------Usage----------
ftr2xys(ftr.file, path=getwd())
参数----------Arguments----------
参数:ftr.file
character; file path of feature report file to convert into an xys file
字符;特征报告文件的文件路径转换成XYS文件
参数:path
file path to directory where the xys-file should be written to; defaults to the current working directory
XYS-文件应写入;默认为当前工作目录到目录文件路径
Details
详情----------Details----------
The output file is names as the input ftr file; with the file extension .ftr replaced by .xys.
输出文件是输入ftr文件名,文件扩展名.ftr.xys取代。
值----------Value----------
Function returns only NULL invisibly and is only called for its side effect to write the xys-file into the current working directory.
函数返回只NULL无形的,并且只要求其副作用XYS文件写入到当前的工作目录。
注意----------Note----------
This function should only be used with one-color Nimblegen microarrays and when the correct xys-file of the raw data is not available. The output file can be used with the function read.xysfiles of package oligo.
此功能应该只能用一个颜色的NimbleGen芯片和XYS正确的原始数据文件时是无法使用。输出文件可以使用的功能read.xysfiles包oligo。
作者(S)----------Author(s)----------
Joern Toedling
举例----------Examples----------
## Not run: [#无法运行:]
sapply(list.files(pattern=".ftr$"),ftr2xys)
library(oligo)
fs = read.xysfiles(list.xysfiles())