R语言 R453Plus1Toolbox包 AnnotatedVariants-class()函数中文帮助文档(中英文对照)

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AnnotatedVariants-class(R453Plus1Toolbox)
AnnotatedVariants-class()所属R语言包：R453Plus1Toolbox

                                        Class "AnnotatedVariants"
                                         类“AnnotatedVariants”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

A class for storing annotation about variants. An object of this class is returned by the method annotateVariants. The class has not been designed
A类存储约变种注释。这个类的一个对象的方法annotateVariants返回。尚未设计类


Details

详情----------Details----------

The list encapsulated by this class has one element for each variant. Each element is a nested list with the elements genes, transcripts, exons and snps. All these elements are data frames listing genes, transcripts, exons or snps respectively that were affected by the variant. Use the example below to explore
这个类封装的名单中有一个元素的每个变种。每个元素都是一个元素的嵌套列表genes，transcripts，exons和snps。所有这些元素是数据框上市的基因，成绩单，外显子单核苷酸多态性变异影响。使用下面的例子中探索


类的对象----------Objects from the Class----------

Objects can be created by calls of the form new("AnnotatedVariants"). The method annotateVariants returns AnnotatedVariants-objects.
创建对象可以通过检测的形式new("AnnotatedVariants")。 annotateVariantsAnnotatedVariants返回对象的方法。


插槽----------Slots----------




annotatedVariants: Object of class "list" with one entry for
annotatedVariants："list"类的对象有一个条目


方法----------Methods----------




annotatedVariants signature(object = "AnnotatedVariants"): Get the
annotatedVariantssignature(object = "AnnotatedVariants")：获取




annotatedVariants<- signature(object = "AnnotatedVariants", value = "list"):
annotatedVariants < - signature(object = "AnnotatedVariants", value = "list")：




names signature(x = "AnnotatedVariants"): Get the
名signature(x = "AnnotatedVariants")：




names<- signature(x = "AnnotatedVariants", value = "character"):
名称< - signature(x = "AnnotatedVariants", value = "character")：


作者（S）----------Author(s)----------


Hans-Ulrich Klein



参见----------See Also----------

annotateVariants, htmlReport
annotateVariants，htmlReport


举例----------Examples----------


variants = data.frame(
    start=c(106157528, 106154991,106156184),
    end=c(106157528, 106154994,106156185),
    chromosome=c("4", "4", "4"),
    strand=c("+", "+", "+"),
    seqRef=c("A", "ATAG", "---"),
    seqMut=c("G", "----", "ATA"),
    seqSur=c("TACAGAA", "TTTATAGATA", "AGC---TCC"),
    stringsAsFactors=FALSE)
rownames(variants) = c("snp", "del", "ins")
## Not run: av = annotateVariants(variants)[＃不运行：AV = annotateVariants（变种）]
## Not run: annotatedVariants(av)[["snp"]][＃无法运行：annotatedVariants（AV）[“SNP”]]

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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