R语言 puma包 pumaPCARes-class()函数中文帮助文档(中英文对照)

loveR

pumaPCARes-class(puma)
pumaPCARes-class()所属R语言包：puma

                                        Class pumaPCARes
                                         类pumaPCARes

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

This is a class representation for storing the outputs of the pumaPCA function. Objects of this class should usually only be created through the pumaPCA function.
这是为存储的pumaPCA功能输出的类表示。这个类的对象，通常只被创建通过pumaPCA功能。


类的对象----------Objects from the Class----------

Objects can be created by calls of the form new("pumaPCARes", ...).
创建对象可以通过检测的形式new("pumaPCARes", ...)。


插槽----------Slots----------




model: Object of class "pumaPCAModel" representing the model parameters
model：对象类“pumaPCAModel”代表模型参数




expectations: Object of class "pumaPCAExpectations" representing the model expectations
expectations：对象类“pumaPCAExpectations”代表模型的期望




varY: Object of class "matrix" representing the variance in the expression levels
varY：对象类“矩阵”代表中的表达水平的差异




Y: Object of class "matrix" representing the expression levels
Y：对象类的“矩阵”代表表达水平




phenoData: Object of class "AnnotatedDataFrame" representing the phenotype information
phenoData：类“AnnotatedDataFrame”的代表型的信息对象




timeToCompute: Object of class "numeric" representing the time it took pumaPCA to run
timeToCompute：对象类的“数字”，代表了pumaPCA运行时间




numberOfIterations: Object of class "numeric" representing the number of iterations it took pumaPCA to converge
numberOfIterations：对象类“数字”代表迭代次数了pumaPCA收敛




likelihoodHistory: Object of class "list" representing the history of likelihood values while pumaPCA was running
likelihoodHistory：对象类“名单”的可能性值的历史，而pumaPCA运行




timingHistory: Object of class "list" representing the history of how long each iteration took while pumaPCA was running
timingHistory：对象类“名单”代表每个迭代了多久的历史，而pumaPCA运行




modelHistory: Object of class "list" representing the history of how the model was changing while pumaPCA was running
modelHistory：对象类“名单”模型如何被改变的历史，而pumaPCA运行




exitReason: Object of class "character" representing the reason pumaPCA halted. Can take the values "Update of Likelihood less than tolerance x", "Update of W less than tolerance x", "Iterations exceeded", "User interrupt", "unknown exit reason"
exitReason：对象类“人物”的原因pumaPCA停止。可以利用的价值，“W的更新小于公差x”似然小于公差x更新“，”迭代超标“，”用户中断“，”退出的原因未知“


方法----------Methods----------




plot signature(x="pumaPCARes-class"): plots two principal components on a scatter plot.
图signature(x="pumaPCARes-class")：散点图图上的两个主要组成部分。




write.reslts signature(x = "pumaPCARes-class"): writes the principal components for each array to a file. It takes the same arguments as write.table. The argument "file" does not need to set any extension. The file name and extension "csv" will be added automatically. The default file name is "tmp".
write.resltssignature(x = "pumaPCARes-class")：每个阵列的主要组成部分写入到一个文件中。它需要write.table相同的论点。 “文件”的说法并不需要设置任何扩展。 “CSV”文件名和扩展名将会自动添加。默认的文件名是“tmp”的。


作者（S）----------Author(s)----------


Richard D. Pearson



参见----------See Also----------

Related method pumaPCA and related class pumaPCARes.
此方法pumaPCA和相关的类pumaPCARes。

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。