R语言 puma包 exprReslt-class()函数中文帮助文档(中英文对照)

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exprReslt-class(puma)
exprReslt-class()所属R语言包：puma

                                        Class exprReslt
                                         类exprReslt

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

This is a class representation for Affymetrix GeneChip probe level data.  The main component are the intensities, estimated expression levels and the confidence  of expression levels from multiple arrays
这是一个类表示Affymetrix基因芯片探针级数据。主要成分的强度，估计表达水平和表达水平，从多个阵列的信心


类的对象----------Objects from the Class----------

Objects can be created by calls of the form new("exprReslt", ...).
创建对象可以通过检测的形式new("exprReslt", ...)。


插槽----------Slots----------




prcfive: Object of class "matrix" representing the 5 percentile of the  observed expression levels. This is a matrix with columns representing patients or cases and
prcfive：对象类“矩阵”所观察到的表达水平较5百分。这是一个矩阵的列代表病人或情况




prctwfive: Object of class "matrix" representing the 25 percentile of the  observed expression levels. This is a matrix with columns representing patients or cases and
prctwfive：对象类“矩阵”所观察到的表达水平的25百分。这是一个矩阵的列代表病人或情况




prcfifty: Object of class "matrix" representing the 50 percentile of the  observed expression levels. This is a matrix with columns representing patients or cases and
prcfifty：对象类“矩阵”所观察到的表达水平的50百分。这是一个矩阵的列代表病人或情况




prcsevfive: Object of class "matrix" representing the 75 percentile of the  observed expression levels. This is a matrix with columns representing patients or cases and
prcsevfive：对象类“矩阵”所观察到的表达水平的75百分。这是一个矩阵的列代表病人或情况




prcninfive: Object of class "matrix" representing the 95 percentile of the  observed expression levels. This is a matrix with columns representing patients or cases and
prcninfive：对象类“矩阵”所观察到的表达水平的95百分。这是一个矩阵的列代表病人或情况




phenoData: Object of class "phenoData" inherited from
phenoData：类“phenoData”的Object继承。




annotation: A character string identifying the
annotation：一个字符串确定


延伸----------Extends----------

Class "ExpressionSet", directly.
类"ExpressionSet"，直接。


方法----------Methods----------




se.exprs signature(object = "exprReslt"): obtains the standard error of the estimated
se.exprssignature(object = "exprReslt")：获得的估计标准误差




se.exprs<- signature(object = "exprReslt"): replaces the standard error of the estimated
se.exprs < - signature(object = "exprReslt")：取代的估计标准误差




prcfifty signature(object = "exprReslt"): obtains the 50 percentile of the estimated
prcfiftysignature(object = "exprReslt")：获得的估计50个百分




prcfifty<- signature(object = "exprReslt"): replaces the 50 percentile of the estimated
prcfifty < - signature(object = "exprReslt")：替换估计的50个百分




prcfive signature(object = "exprReslt"): obtains the 5 percentile of the estimated
prcfivesignature(object = "exprReslt")：估计取得的第5百分




prcfive<- signature(object = "exprReslt"): replaces the 5 percentile of the estimated
prcfive < - signature(object = "exprReslt")：取代估计的5个百分




prcninfive signature(object = "exprReslt"): obtains the 95 percentile of the estimated
prcninfive signature(object = "exprReslt")：获得估计的95个百分




prcninfive<- signature(object = "exprReslt"): replaces the 95 percentile of the estimated
prcninfive < - signature(object = "exprReslt")：替换估计的95个百分




prcsevfive signature(object = "exprReslt"): obtains the 75 percentile of the estimated
prcsevfivesignature(object = "exprReslt")：获得的估计75个百分




prcsevfive<- signature(object = "exprReslt"): replaces the 75 percentile of the estimated
prcsevfive < - signature(object = "exprReslt")：取代估计的75个百分




prctwfive signature(object = "exprReslt"): obtains the 25 percentile of the estimated
prctwfivesignature(object = "exprReslt")：得到的估计的25个百分




prctwfive<- signature(object = "exprReslt"): replaces the 25 percentile of the estimated
prctwfive < - signature(object = "exprReslt")：取代估计的25个百分




show signature(object = "exprReslt"): renders information about the exprReslt in a concise
显示signature(object = "exprReslt")：呈现在一个简洁有关的exprReslt的信息




write.reslts signature(x = "exprReslt"): writes the expression levels and related confidences to files. It takes the same arguments as write.table. The argument "file" does not need to set any  extension. The different file marks and extension "csv" will be added automatically. The default file name is "tmp".  In the final results, expression levels are in the file "tmp\_exprs.csv", standard deviations in  "tmp\_se.csv", 5 percentiles in "tmp\_prctile5.csv", likewise, 25, 50, 75 and 95 percentiles in "tmp\_prctile25.csv",
write.resltssignature(x = "exprReslt")：写的表达水平及相关的机密文件。它需要write.table相同的论点。 “文件”的说法并不需要设置任何扩展。不同的文件标记和扩展“CSV”将被自动添加。默认的文件名是“tmp”的。在最后的结果，表达水平是文件中的“TMP \ _exprs.csv”，“TMP \ _se.csv”，5百分“TMP \ _prctile5.csv”，同样，25，50的标准偏差，在“TMP \ _prctile25.csv”75和95百分位数，


作者（S）----------Author(s)----------


Xuejun Liu, Magnus Rattray, Marta Milo, Neil D. Lawrence, Richard D. Pearson



参见----------See Also----------

Related method mmgmos and related class ExpressionSet.
此方法mmgmos和相关的类ExpressionSet。


举例----------Examples----------


## load example data from package affydata[＃从包affydata加载数据为例]
#        Next 4 lines commented out to save time in package checks, and saved version used[接下来的4行注释掉包检查，以节省时间，并保存版本使用]
# if (require(affydata)) {[（要求（affydata））{]
#        data(Dilution)[数据（稀释）]
#        eset_mmgmos &lt;- mmgmos(Dilution)[< -  mmgmos eset_mmgmos（稀释）]
# }[}]
data(eset_mmgmos)

## save the expression results into files[＃表达的结果保存到文件]
write.reslts(eset_mmgmos, file="example")

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