AffySNPPDInfoPkgSeed-class(pdInfoBuilder)
AffySNPPDInfoPkgSeed-class()所属R语言包：pdInfoBuilder
Class "AffySNPPDInfoPkgSeed"
类“AffySNPPDInfoPkgSeed”
译者：生物统计家园网 机器人LoveR
描述----------Description----------
This class represents Platform Design (PD) packages for Affymetrix mapping (SNP chip) arrays.
这个类表示Affymetrix的映射（SNP的芯片）阵列平台的设计（PD）封装。
类的对象----------Objects from the Class----------
Objects can be created by calls of the form new("AffySNPPDInfoPkgSeed", splineParamFile, crlmmInfoFile, referenceDistFile, ...).
创建对象可以通过检测的形式new("AffySNPPDInfoPkgSeed", splineParamFile, crlmmInfoFile, referenceDistFile, ...)。
插槽----------Slots----------
splineParamFile: Spline parameters file used to compute the
splineParamFile：用来计算的样条参数文件
crlmmInfoFile: Data file containing regions data used
crlmmInfoFile：数据文件包含区域的数据使用
referenceDistFile: Reference distribution file used in
referenceDistFile：参考分发文件
cdfFile: CDF file for the design.
cdfFile：民防部队的设计文件。
csvAnnoFile: Affymetrix CSV Annotation file.
csvAnnoFile：Affymetrix公司CSV批注文件。
csvSeqFile: Affymetrix Probe Sequence file.
csvSeqFile：Affymetrix的探针序列文件。
chipName: Name of the chip or platform
chipName：芯片或平台的名称
manufacturer: chip/platform manufacturer
manufacturer：芯片/平台制造商
url: chip URL
url：芯片网址
genomebuild: The genome build this platform is based
genomebuild：建立这个平台是基于基因组
organism: organism for chip.
organism：生物芯片。
species: species for chip.
species：种芯片。
version: A character vector giving the version
version：一个特征向量，给人的版本
license: The license of the package
license：包许可证
author: Author of the package
author：包作者
email: An email address to use in the Maintainer field
email：在保持领域使用的电子邮件地址
biocViews: Character data for the biocViews field of
biocViews：的biocViews场的字符数据
方法----------Methods----------
chipName signature(object = "AffySNPPDInfoPkgSeed"): ...
chipNamesignature(object = "AffySNPPDInfoPkgSeed")...
getGeometry signature(object = "AffySNPPDInfoPkgSeed"): ...
getGeometrysignature(object = "AffySNPPDInfoPkgSeed")：...
makePdInfoPackage signature(object = "AffySNPPDInfoPkgSeed"): ...
makePdInfoPackagesignature(object = "AffySNPPDInfoPkgSeed")...
注意----------Note----------
*IMPORTANT* The user is strongly advised to download Affymetrix SNP packages from BioConductor.
*重要*用户强烈建议从BioConductor下载的Affymetrix公司的SNP包。
The files used for slots splineParamFile, crlmmInfoFile, and referenceDistFile are generated by the Bioconductor project for each chip/platform and are hosted in our svn data repository at https://hedgehog.fhcrc.org/bioc-data/trunk/annotation/parms_store. When makePdInfoPackage is run, these files are simply copied to the inst/extdata directory of the generated package.
的插槽使用的文件splineParamFile，crlmmInfoFile，referenceDistFile生成每个芯片由Bioconductor项目的/平台，并在我们的SVN数据仓库在https://hedgehog.fhcrc主办.org / bioc数据/主干/注释/ parms_store。当makePdInfoPackage运行时，这些文件直接复制到生成的包目录inst/extdata。
举例----------Examples----------
showClass("AffySNPPDInfoPkgSeed")
cdfFile <- "Mapping250K_Nsp.cdf"
csvAnno <- "Mapping250K_Nsp_annot.csv"
csvSeq <- "Mapping250K_Nsp_probe_tab"
spline <- "pd.mapping250k.nsp.spline.params.rda"
refd <- "pd.mapping250k.nspRef.rda"
crlmmInf <- "pd.mapping250k.nspCrlmmInfo.rda"
pkg <- new("AffySNPPDInfoPkgSeed",
version="0.1.5",
author="A. U. Thor", email="au@thor.net",
biocViews="AnnotationData",
genomebuild="NCBI Build 35, May 2004",
cdfFile=cdfFile, csvAnnoFile=csvAnno, csvSeqFile=csvSeq,
splineParamFile=spline, crlmmInfoFile=crlmmInf,
referenceDistFile=refd)
showMethods(classes=class(pkg))
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-26 10:58:37
