R语言 mosaics包 BinData-class()函数中文帮助文档(中英文对照)

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BinData-class(mosaics)
BinData-class()所属R语言包：mosaics

                                        Class "BinData"
                                         类“BinData”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

This class represents bin-level ChIP-seq data.
这个类表示斌级芯片SEQ数据。


类的对象----------Objects from the Class----------

Objects can be created by calls of the form new("BinData", ...).
创建对象可以通过检测的形式new("BinData", ...)。


插槽----------Slots----------




chrID: Object of class "character",
chrID：Object类的"character"，




coord: Object of class "numeric",
coord：Object类的"numeric"，




tagCount: Object of class "numeric",
tagCount：Object类的"numeric"，




mappability: Object of class "numeric",
mappability：Object类的"numeric"，




gcContent: Object of class "numeric",
gcContent：Object类的"numeric"，




input: Object of class "numeric",
input：Object类的"numeric"，




dataType: Object of class "character",  indicating how reads were processed. Possible values are  "unique" (only uniquely aligned reads were retained)
dataType：Object类的"character"，说明如何读取进行了处理。可能的值是“独一无二”（只有唯一对准读取保留）


方法----------Methods----------




mosaicsFit signature(object = "BinData"):
mosaicsFitsignature(object = "BinData")：




plot signature(x = "BinData", y = "missing", plotType = NULL ):  provide exploratory plots of mean ChIP tag counts. This method plots mean ChIP tag counts versus mappability score, GC content score, and input tag counts, with 95% confidence intervals,   for plotType="M", plotType="GC", and plotType="input", respectively. plotType="M|input" and plotType="GC|input" provide plots of mean ChIP tag counts versus mappability and GC content score, respectively, conditional on input tag counts.
图signature(x = "BinData", y = "missing", plotType = NULL )：提供探索图的平均芯片标记计数。这种方法绘制意味着，与mappability得分GC含量的得分，并输入标记计数芯片标记计数，95％置信区间，plotType="M"，plotType="GC"，plotType="input"，分别。 plotType="M|input"和plotType="GC|input"提供芯片与mappability和GC含量得分平均标记数，分别输入标记计数条件的图。




print signature(x = "BinData"):
打印signature(x = "BinData")：




show signature(object = "BinData"): provide brief summary of the object.
显示signature(object = "BinData")：提供简要的对象。


作者（S）----------Author(s)----------


Dongjun Chung, Pei Fen Kuan, Sunduz Keles



参考文献----------References----------

"A Statistical Framework for the Analysis of ChIP-Seq Data",  Journal of the American Statistical Association, Vol. 106, pp. 891-903.

参见----------See Also----------

readBins, mosaicsFit.
readBins，mosaicsFit。


举例----------Examples----------


showClass("BinData")
## Not run: [＃无法运行：]
library(mosaicsExample)
data(exampleBinData)

exampleBinData
print(exampleBinData)[1:10,]
plot(exampleBinData)
plot( exampleBinData, plotType="M" )
plot( exampleBinData, plotType="GC" )
plot( exampleBinData, plotType="input" )
plot( exampleBinData, plotType="M|input" )
plot( exampleBinData, plotType="GC|input" )

exampleFit <- mosaicsFit( exampleBinData, analysisType="TS" )

## End(Not run)[＃结束（不运行）]

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


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