R语言 methylumi包 MethyLumiQC-class()函数中文帮助文档(中英文对照)

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MethyLumiQC-class(methylumi)
MethyLumiQC-class()所属R语言包：methylumi

                                        Class "MethyLumiQC" for holding Illumina methylation QC data
                                         使类的“MethyLumiQC”控股Illumina的甲基化QC数据

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

This class inherits from the MethyLumi class (and therefore, from eSet in Biobase) and is designed to hold QC data from Illumina Beadstudio output.  These data can be potentially useful when determining the cause for quality problems.
这个类继承自MethyLumi类（因此，从ESET在BIOBASE）举行QC数据从Illumina的Beadstudio输出。确定质量问题的原因时，这些数据可以是潜在有用的。


类的对象----------Objects from the Class----------

Objects can be created by calls of the form new("MethyLumiQC", assayData, phenoData, featureData, experimentData, annotation, betas).
创建对象可以通过检测的形式new("MethyLumiQC", assayData, phenoData, featureData, experimentData, annotation, betas)。


插槽----------Slots----------




assayData: Object of class "AssayData"
assayData类"AssayData"：对象




phenoData: Object of class "AnnotatedDataFrame"
phenoData类"AnnotatedDataFrame"：对象




featureData: Object of class "AnnotatedDataFrame" containing the annotation columns from the Illumina Beadstudio output.  In particular, the names of the
featureData：Object类的"AnnotatedDataFrame"包含从Illumina公司Beadstudio输出的注解列。在特定的名称




experimentData: Object of class "MIAME"
experimentData类"MIAME"：对象




annotation: Object of class "character", not
annotation类"character"，不对象




.__classVersion__: Object of class "Versions"
.__classVersion__类"Versions"：对象


延伸----------Extends----------

Class "MethyLumi", directly. Class "eSet", by class "MethyLumi", distance 2. Class "VersionedBiobase", by class "MethyLumi", distance 3. Class "Versioned", by class "MethyLumi", distance 4.
类"MethyLumi"，直接。类"eSet"，类“MethyLumi”，距离为2。类"VersionedBiobase"，类“MethyLumi”，距离3。类"Versioned"，类“MethyLumi”，距离4。


方法----------Methods----------




initialize signature(.Object = "MethyLumiQC")
初始化signature(.Object = "MethyLumiQC")




Cy3.N signature(object = "MethyLumiQC"): ...
Cy3.Nsignature(object = "MethyLumiQC")...




Cy3<- signature(object = "MethyLumiQC", value = "matrix"): ...
Cy3标记< - signature(object = "MethyLumiQC", value = "matrix")：...




Cy5.N signature(object = "MethyLumiQC"): ...
Cy5.Nsignature(object = "MethyLumiQC")...




Cy5<- signature(object = "MethyLumiQC", value = "matrix"): ...
Cy5的< - signature(object = "MethyLumiQC", value = "matrix")：...




QCdata<- signature(object = "MethyLumiSet", value = "MethyLumiQC"): ...
QCdata < - signature(object = "MethyLumiSet", value = "MethyLumiQC")...




combine signature(x = "MethyLumiQC", y = "MethyLumiQC"): ...
结合signature(x = "MethyLumiQC", y = "MethyLumiQC")：...




controlData<- signature(object = "MethyLumiSet", value = "MethyLumiQC"): ...
controlData < - signature(object = "MethyLumiSet", value = "MethyLumiQC")...




controlTypes signature(object = "MethyLumiQC"):
controlTypessignature(object = "MethyLumiQC")：




hist signature(x = "MethyLumiQC"): ...
历史signature(x = "MethyLumiQC")...




intensitiesByChannel signature(object = "MethyLumiQC"): ...
intensitiesByChannelsignature(object = "MethyLumiQC")：...




methylated signature(object = "MethyLumiQC"): ...
甲基signature(object = "MethyLumiQC")...




negctls.stderr signature(object = "MethyLumiQC", channel = "character"): ...
negctls.stderrsignature(object = "MethyLumiQC", channel = "character")：...




negctls.stderr signature(object = "MethyLumiQC", channel = "missing"): ...
negctls.stderrsignature(object = "MethyLumiQC", channel = "missing")：...




negctls signature(object = "MethyLumiQC", channel = "character"): ...
negctlssignature(object = "MethyLumiQC", channel = "character")...




negctls signature(object = "MethyLumiQC", channel = "missing"): ...
negctlssignature(object = "MethyLumiQC", channel = "missing")...




negnorm signature(object = "MethyLumiQC", channel = "character"): ...
negnormsignature(object = "MethyLumiQC", channel = "character")...




negnorm signature(object = "MethyLumiQC", channel = "missing"): ...
negnormsignature(object = "MethyLumiQC", channel = "missing")...




normctls signature(object = "MethyLumiQC"): ...
normctlssignature(object = "MethyLumiQC")...




qcplot signature(object = "MethyLumiQC", what, ...):
qcplotsignature(object = "MethyLumiQC", what, ...)：




unmethylated signature(object = "MethyLumiQC"): ...
甲基化signature(object = "MethyLumiQC")...


作者（S）----------Author(s)----------


Sean Davis &lt;sdavis2@mail.nih.gov&gt;



参见----------See Also----------

methylumiR, MethyLumiSet, MethyLumi, eSet
methylumiR，MethyLumiSet，MethyLumi，eSet


举例----------Examples----------


showClass("MethyLumiQC")

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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