produceMethylationGEOSubmissionFile(lumi)
produceMethylationGEOSubmissionFile()所属R语言包：lumi
Produce GEO Sample Submission File of Illumina methylation microarray data in SOFT format
软格Illumina的甲基化在基因芯片数据的产生GEO样品提交文件
译者：生物统计家园网 机器人LoveR
描述----------Description----------
Produce GEO Sample Submission File in the SOFT format based on the provided MethyLumiM object and sample information
在软格上所提供的MethyLumiM对象和样本信息的基础上产生GEO样品提交文件
用法----------Usage----------
produceMethylationGEOSubmissionFile(methyLumiM, methyLumiM.raw = NULL, lib.mapping = NULL, idType = "Probe", sampleInfo = NULL, fileName = "GEOSubmissionFile.txt", supplementaryRdata = TRUE, ...)
参数----------Arguments----------
参数：methyLumiM
The normalized data in MethyLumiM class
MethyLumiM类规范化的数据
参数：methyLumiM.raw
The raw data in MethyLumiM class
MethyLumiM类的原始数据
参数：lib.mapping
Currently not used for Illumina methylation data
目前没有用于Illumina的甲基化数据
参数：idType
Currently no other options for Illumina methylation data
目前还没有其他选项为Illumina的甲基化数据
参数：sampleInfo
The sample information filename or data.frame, which is returned by produceGEOSampleInfoTemplate
样本信息的文件名或数据框，这是由produceGEOSampleInfoTemplate返回
参数：fileName
The file name of GEO Submission file
土力工程处提交文件的文件名
参数：supplementaryRdata
determine whether produce the Rdata supplement data, which include both methyLumiM and methyLumiM.raw R objects.
确定是否产生的的RDATA补充数据，其中包括methyLumiM和methyLumiM.raw R对象。
参数：...
other parameters used by function nuID2IlluminaID, but not implemented for methylation data
函数nuID2IlluminaID使用其他参数，但没有实现甲基化数据
Details
详情----------Details----------
The function produces the GEO sample submission file including both normalized and raw data information in the SOFT format. The sample information should be provided by the user as a data.frame or Tab separated text file following the format of the template, which can be produced by function produceGEOSampleInfoTemplate. Users need to fill in the detailed sample descriptions in the template, especially the Sample\_title, Sample\_description and some protocols. Users are also required to fill in the "Sample\_platform\_id" by checking information of the GEO Illumina platform.
该函数产生了GEO样本规范化和软格式的原始数据信息，包括提交文件。样品应提供用户数据框或制表符分隔的文本文件格式的模板，可以通过功能produceGEOSampleInfoTemplate。用户需要填写详细的样本描述模板中，尤其是样品\ _title，样品\ _description和一些协议。用户还需要填写“样品\ _platform \的_id”检查GEO Illumina平台的信息。
When the parameter "supplementaryRdata" is TRUE, the R objects, methyLumiM, methyLumiM.raw and sampleInfo, will be saved in a file named 'supplementaryData.Rdata'.
当参数“supplementaryRdata”为TRUE，R对象，methyLumiM，methyLumiM.raw和sampleInfo的，将被保存在一个文件名为“supplementaryData.Rdata”。
值----------Value----------
Save the result as a text file in SOFT sample submission format. The supplementary Rdata will be saved in a file 'supplementaryData.Rdata'.
作为软样品提交格式的文本文件保存的结果。补充RDATA将保存在文件“supplementaryData.Rdata。
作者（S）----------Author(s)----------
Pan Du
参考文献----------References----------
<h3>See Also</h3>
举例----------Examples----------
## Not run[＃无法运行]
## Produce the sample information template[＃产生的样本资料模板]
# produceGEOSampleInfoTemplate(methyLumiM, fileName = "GEOsampleInfo.txt")[produceGEOSampleInfoTemplate（methyLumiM，FILENAME = GEOsampleInfo.txt“）]
## After editing the 'GEOsampleInfo.txt' by filling in sample information[＃后填写样品信息编辑“GEOsampleInfo.txt”]
# produceMethylationGEOSubmissionFile(methyLumiM, methyLumiM.raw, sampleInfo='GEOsampleInfo.txt')[produceMethylationGEOSubmissionFile（methyLumiM，methyLumiM.raw，sampleInfo =的“GEOsampleInfo.txt）]
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-25 23:51:30
