R语言 KEGGgraph包 KEGGPathway-class()函数中文帮助文档(中英文对照)

loveR

KEGGPathway-class(KEGGgraph)
KEGGPathway-class()所属R语言包：KEGGgraph

                                        Class "KEGGPathway"
                                         类“KEGGPathway”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

A class to represent KEGG pathway
A级代表KEGG通路


类的对象----------Objects from the Class----------

Objects can be created by calls of the form new("KEGGPathway",   ...) . Normally they are created by parseKGML.
创建对象可以通过检测的形式new("KEGGPathway",   ...)。通常情况下，他们创建parseKGML。


插槽----------Slots----------




pathwayInfo:  An object of KEGGPathwayInfo-class
pathwayInfo：KEGGPathwayInfo-class的对象




nodes:  List of objects of KEGGNode-class
nodes：KEGGNode-class对象名单




edges:   List of objects of
edges：对象名单




reactions:  List of objects of
reactions：对象名单


方法----------Methods----------




edges signature(object = "KEGGPathway", which =
边缘的<code>签名（对象=“KEGGPathway”，其中=




edges<- signature(object = "KEGGPathway"): setting edges
边< - signature(object = "KEGGPathway")：设置边缘




getName signature(object = "KEGGPathway"): getting
的getNamesignature(object = "KEGGPathway")：越来越




getTitle signature(object = "KEGGPathway"): getting
getTitlesignature(object = "KEGGPathway")：越来越




nodes<- signature(object = "KEGGPathway", value =
节点< - 的<code>签名（对象=“KEGGPathway”，值=




nodes signature(object = "KEGGPathway"): KEGGNodes of
节点signature(object = "KEGGPathway")：KEGGNodes




getPathwayInfo signature(object = "KEGGPathway"): getting
getPathwayInfosignature(object = "KEGGPathway")：越来越




getTitle signature(object = "KEGGPathway"): getting
getTitlesignature(object = "KEGGPathway")：越来越




show signature(object = "KEGGPathway"): display method
显示signature(object = "KEGGPathway")：显示方法


作者（S）----------Author(s)----------


Jitao David Zhang <a href="mailto:jitao_david.zhang@roche.com">mailto:jitao_david.zhang@roche.com</a>



参考文献----------References----------

<h3>See Also</h3>  <code>parseKGML</code>, <code>KEGGEdge-class</code>, <code>KEGGNode-class</code>, <code>KEGGReaction-class</code>

举例----------Examples----------


## We show how to extract information from KEGGPathway objects[＃我们展示如何从KEGGPathway对象的信息]
## Parse KGML file into a 'KEGGPathway' object[＃解析成一个KEGGPathway对象KGML文件]
mapfile <- system.file("extdata/map00260.xml", package="KEGGgraph")
maptest <- parseKGML(mapfile)

## short summary of the pathway[＃途径的简短摘要]
maptest

## get information of the pathway[＃获取信息的途径。]
getPathwayInfo(maptest)

## nodes of the pathway[＃节点的通路]
nodes <- nodes(maptest)
node <- nodes[[3]]
getName(node)
getType(node)
getDisplayName(node)

## edges of the pathway[＃边缘的途径]
edges <- edges(maptest)
edge <- edges[[3]]
getEntryID(edge)
getSubtype(edge)

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。