listInv-methods(inveRsion)
listInv-methods()所属R语言包：inveRsion
Constructor of class inversionList
类的构造inversionList
译者：生物统计家园网 机器人LoveR
描述----------Description----------
Determines the full inversion sequence from overlapping trial segments of fixed window sized. It computes the limits of the inversion, the population frequency and retrieves the maximum BIC across the trial segments.
决定从完整的反转序列重叠的大小固定窗口的试验段。它计算反演的限制，人口的频率和检索整个试验段最大的BIC。
用法----------Usage----------
listInv(object, hapCode, geno, ROI, saveRes, thBic, all, saveROI)
参数----------Arguments----------
参数：object
scan. Results of scanning the genome for an inversion with a fixed window size; output of scanInv.
scan。一个固定的窗口大小的反转基因组扫描的结果;输出scanInv。
参数：hapCode
HaploCode. Object with the result of coding haplotypes for each candidate brake-point; output of codeHaplo
HaploCode。对象编码为每个候选制动点的单体型的结果;的codeHaplo输出
参数：geno
logical. Whether original data is genotypes of phased haplotypes.
logical。无论是原始数据是分阶段单体型的基因型。
参数：ROI
numeric. 2-vector specification passes the chromosome segment to be analyzed. 4-vector specification passes the region of interest for the left brake-point (ROI[1] and ROI[2]) and the right brake-point (ROI[3] and ROI[4]). ROI should be specified in mega-basis units.
numeric。 2矢量规范，通过染色体片段进行分析。 4矢量规范通过该区域的利益为左刹车点（投资回报率[1]和投资回报率[2]）和正确的刹车点（投资回报率[3]和投资回报率[4]）。应在大型基础单位指定的投资回报率。
参数：saveRes
logical.Whether results should be saved into file list Inv.RData
logical。结果是否应保存到文件“list Inv.RData
参数：thBic
numeric. BIC threshold above which trial segments are selected.
numeric。 BIC的阈值以上试验段被选中。
参数：all
logical. Whether recomputing within the ROI should be done for all possible segment sizes or the window size in scan.
logical。是否应做的投资回报率重新计算内所有可能的段大小或scan的窗口的大小。
参数：saveROI
logical. Whether saving the blocks for the candidate break-points for all the ROIs.
logical。是否保存所有的投资回报为突破点候选块。
Details
详情----------Details----------
listInv is both a method for class scan and constructor of inversionList. It re-runs the inversion model within the ROIs found in the previous scan. However, it is also possible to explicitly pass the ROIs defined by the user. The re-run is done with the same window size of the scan, which is convenient if enough significant trial segments where found within the inversion segment. If a more detailed re-run is needed set all=TRUE. This computes the model for all possible trial segments of any length within the ROI. Note that for high SNP density this can be computational intensive.
listInv类scan和inversionList构造一个方法。它重新运行反演模型内发现在上次扫描的投资回报。然而，它也可以明确地传递给用户定义的投资回报。重新运行扫描相同的窗口大小，这是方便，如果有足够多的重大试验段内发现的反演段。如果需要更详细的重办设置all=TRUE。这所有可能的审判领域内的投资回报率的任何长度计算模型。注意：高的SNP密度可以计算密集型。
值----------Value----------
inversionList
inversionList
方法----------Methods----------
作者（S）----------Author(s)----------
Alejandro Caceres <a href="mailto:acaceres@creal.cat">acaceres@creal.cat</a>
参见----------See Also----------
HaploCode,scan,inversionList
HaploCode，scan，inversionList
举例----------Examples----------
data(scanRes)
data(hapCode)
invList<-listInv(scanRes,hapCode=hapCode,geno=FALSE,saveRes=FALSE,all=FALSE,thBic=0, saveROI=FALSE)
invList
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
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发表于 2012-2-25 22:21:41
