mapIdentifiers-methods(GSEABase)
mapIdentifiers-methods()所属R语言包：GSEABase
Methods for Function mapIdentifiers in Package ‘GSEABase’
功能mapIdentifiers方法包GSEABase
译者：生物统计家园网 机器人LoveR
描述----------Description----------
These methods convert the genes identifiers of a gene set from one type to another, e.g., from EntrezIdentifier to AnnotationIdentifier. Methods can be called directly by the user; geneIdType<- provides similar functionality. verbose=TRUE produces warning messages when maps between identifier types are not 1:1, or a map has to be constructed on the fly (this situation does not apply when using the DBI-based annotation packages).
这些方法转换的基因的基因从一个类型到另一个设置的标识符，例如，从EntrezIdentifierAnnotationIdentifier。方法可以由用户直接调用;geneIdType<-提供类似的功能。 verbose=TRUE产生警告消息时标识符类型之间的映射是不是1:1，或在图上动态构造（这种情况并不适用于使用基于DBI的注解包时）。
方法----------Methods----------
The following methods are defined on what="GeneSet":
定义what="GeneSet"以下方法：
This method warns of attempts to map from and to the same type, or generates an error if no suitable
这种方法警告如果没有合适的图from和to同一类型的，或产生一个错误的尝试
This method will re-dispatch to a method with signature signature(what=what, to=to, from=geneIdType(what)), and is present so that a user can call mapIdentifiers without providing an
此方法将重新派遣签名signature(what=what, to=to, from=geneIdType(what))的方法，是目前使用户可以调用mapIdentifiers没有提供一个
This maps a gene set from gene identifiers represented by the NullIdentifier type (i.e., no type associated with the genes) to gene identifiers represent by any class derived from
这个图的基因从NullIdentifier型（即，与基因有关的任何类型）基因标识所代表的基因标识代表来自任何类
This maps a gene set from gene identifiers represented by any GeneIdentifierType type to one represented by the
这个图的基因代表所代表的任何GeneIdentifierType类型的基因标识设置
Maps identifiers found in what to the type described by
图标识所描述的类型发现在what
Maps identifiers found in what to the type described by
图标识所描述的类型发现在what
The following methods are defined for what=GeneColorSet. These methods map gene- and phenotype color appropriately, and fail if coloring of gene identifiers involved in several-to-1 mappings conflict.
下列方法被定义为what=GeneColorSet。这些方法映射到适当的基因表型的颜色，和失败，如果涉及基因标识的着色数-1映射冲突。
This method will re-dispatch to a method with signature signature(what=what, to=to, from=geneIdType(what)), and is present so that a user can call mapIdentifiers without providing an
此方法将重新派遣签名signature(what=what, to=to, from=geneIdType(what))的方法，是目前使用户可以调用mapIdentifiers没有提供一个
This maps a gene set from gene identifiers represented by the NullIdentifier type (i.e., no type associated with the genes) to gene identifiers represent by any class derived from
这个图的基因从NullIdentifier型（即，与基因有关的任何类型）基因标识所代表的基因标识代表来自任何类
This maps a gene set from gene identifiers represented by any GeneIdentifierType type to one represented by the
这个图的基因代表所代表的任何GeneIdentifierType类型的基因标识设置
This method is not implemented, and exists to stop incorrect
这种方法不落实，存在停止错误
This method is not implemented, and exists to stop incorrect
这种方法不落实，存在停止错误
A method exists for what="GeneSetCollection":
存在的一种方法what="GeneSetCollection"：
Map each gene set in what to gene identifier type
映射what设置每一个基因的基因标识符类型
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-25 21:17:38
