getMultiLayerGraphIDs(GeneAnswers)
getMultiLayerGraphIDs()所属R语言包：GeneAnswers
retrieve multilayer interacted nodes for given IDs and interaction Matrix
检索多层互动的节点ID和互动矩阵
译者：生物统计家园网 机器人LoveR
描述----------Description----------
A function to retrieve multilayer interacted nodes for given IDs and interaction Matrix with specified filtered IDs.
一个函数来检索多层互动的节点的ID和互动矩阵与指定过滤的ID。
用法----------Usage----------
getMultiLayerGraphIDs(graphIDs, idType=c('GO', 'GO.BP', 'GO.CC', 'GO.MF', 'GeneInteraction', 'Customized'), edgeM=NULL, layers=1, filterGraphIDs=NULL, filterLayer=0, UP=TRUE, directed=FALSE, verbose=TRUE)
参数----------Arguments----------
参数：graphIDs
a character vector for given IDs
一个给定的ID的特征向量
参数：idType
type of IDs, could be one of 'GO', 'GO.BP', 'GO.CC', 'GO.MF', 'GeneInteraction' and 'Customized'
ID的类型，可能是GO，GO.BP，GO.CC，GO.MF，GeneInteraction“和”定制“
参数：edgeM
a 2-column Matrix representing a network
2列的矩阵网络
参数：layers
an integer, specify how many layers will be retrieved.
一个整数，指定将检索多少层。
参数：filterGraphIDs
a chacater vector for filtered IDs
一个过滤身份证chacater矢量
参数：filterLayer
an integer, specify where filterGraphIDs are applied.
一个整数，指定应用filterGraphIDs的。
参数：UP
logic, determine search Parents or Children. Only valid for directed relation.
逻辑，确定搜索的父母或子女。唯一有效的指挥关系。
参数：directed
logic, the network is a directed or not
逻辑，网络是一个定向或不
参数：verbose
logic, specify to show information or not.
逻辑，指定或不显示信息。
Details
详情----------Details----------
Currently, if idType is 'GO', 'GO.BP', 'GO.CC' or 'GO.MF', edgeM will be ignore. edgeM is a 2-column matrix. For directional connection, the direction is from column 1 elements to column 2 elements. For non-directional connection, each connection should be reversely presented twice, one is from column 1 element to column 2 element, while another is from column 2 element to column 1 element. In other words, non-directional connection is considered as two reverse directional connections. filterGraphIDs are applied only at the filterLayer and more outer layers. This means the nodes between the filterLayer layer and the most external layer belong to the filterGraphIDs. The nodes between given graphIDs and the (filterLayer-1) layer are or are not from filterGraphIDs, but those nodes not in filterGraphIDs should be able to be finally connected by given graphIDs and filterGraphIDs.
目前，edgeM，如果idType被GO，GO.BP，GO.CC“或”GO.MF“，将被忽略。 edgeM是一个2列的矩阵。定向连接，方向是从1列2列元素的元素。对于非定向的连接，每个连接反应提出两次，一个是从1元列第2列元素，而另一个是从第2列元素1列元素。换句话说，非定向的连接被视为两个相反方向的连接。 filterGraphIDs只适用于在filterLayer和更外层。这意味着节点之间的filterLayer层和最外层属于该filterGraphIDs的。在节点之间给予graphIDs（filterLayer-1）层或从filterGraphIDs的，但应该能够给予graphIDs和filterGraphIDs最终连接这些节点不filterGraphIDs。
值----------Value----------
return a list containing elements to represent a network. The first element is a logic value, TRUE means no more connection between the most external layer nodes and other nodes. The second element is a list of layer-length. If the 1st element is FASLE, the length of 2nd element should be (layers + 1). And starting from the 3rd elements, the remaining elements construct a network.
返回一个列表，其中包含的元素代表一个网络。第一个元素是一个逻辑值TRUE，意味着没有更多的最外层节点和其他节点之间的连接。第二个元素是一个层长的名单。如果1元素是FASLE的，第二个元素的长度应该是（层+ 1）。并从第三个元素，其余元素构造一个网络。
作者（S）----------Author(s)----------
Gang Feng, Pan Du and Simon Lin
参考文献----------References----------
<h3>See Also</h3>
举例----------Examples----------
require(GeneAnswers)
example(GeneAnswers)
getMultiLayerGraphIDs(rownames(getEnrichmentInfo(x))[5:6], UP=FALSE)
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-25 18:39:43
