R语言 frma包 frmaExpressionSet-class()函数中文帮助文档(中英文对照)

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frmaExpressionSet-class(frma)
frmaExpressionSet-class()所属R语言包：frma

                                         Class to Contain and Describe High-Throughput Expression Level Assays
                                         类来包含并说明高通量表达水平检测

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

This is a class representation for fRMA-preprocessed expression data. frmaExpressionSet class is derived from ExpressionSet, and requires a matrix named exprs
这是一个类表示为fRMA预处理表达数据。 frmaExpressionSetExpressionSet类派生，并要求名为exprs矩阵


延伸----------Extends----------

Extends class ExpressionSet.
扩展类ExpressionSet。


创建对象----------Creating Objects----------

new("frmaExpressionSet",     exprs = new("matrix"),     se.exprs = new("matrix"),     weights=new("matrix"),     residuals=new("matrix"),     randomeffects=new("matrix"),     phenoData = new("AnnotatedDataFrame"),     featureData = new("AnnotatedDataFrame"),     experimentData = new("MIAME"),     annotation = new("character"),     ...)     
new("frmaExpressionSet",     exprs = new("matrix"),     se.exprs = new("matrix"),     weights=new("matrix"),     residuals=new("matrix"),     randomeffects=new("matrix"),     phenoData = new("AnnotatedDataFrame"),     featureData = new("AnnotatedDataFrame"),     experimentData = new("MIAME"),     annotation = new("character"),     ...)   

This creates a frmaExpressionSet with assayData implicitly created to contain exprs and se.exprs. The only required named arguments is exprs. Three optional named matrices, weights, residuals, and randomeffects can be added to the object.
这将创建一个frmaExpressionSet隐式创建包含assayData和exprs的se.exprs。唯一需要命名参数是exprs。三种可选的命名矩阵，weights，residuals，randomeffects可以添加到对象。

new("frmaExpressionSet",     assayData = assayDataNew(exprs=new("matrix"),se.exprs=new("matrix")),       weights=new("matrix"),     residuals=new("matrix"),     randomeffects=new("matrix"),     phenoData = new("AnnotatedDataFrame"),     featureData = new("AnnotatedDataFrame"),     experimentData = new("MIAME"),     annotation = new("character"),     ...)   
new("frmaExpressionSet",     assayData = assayDataNew(exprs=new("matrix"),se.exprs=new("matrix")),       weights=new("matrix"),     residuals=new("matrix"),     randomeffects=new("matrix"),     phenoData = new("AnnotatedDataFrame"),     featureData = new("AnnotatedDataFrame"),     experimentData = new("MIAME"),     annotation = new("character"),     ...)   

This creates a frmaExpressionSet with assayData provided explicitly. In this form, the only required named argument is assayData. Three optional named matrices, weights, residuals, and randomeffects can be added to the object.
这创建与frmaExpressionSet提供了明确的assayData。在这种形式下，只需要命名参数是assayData。三种可选的命名矩阵，weights，residuals，randomeffects可以添加到对象。


插槽----------Slots----------




se.exprs: standard errors for the expression estimates
se.exprs：为表达估计标准误差




weights: weights used in the summarization step
weights：在总结步骤使用权




residuals: residuals from fitting the probe-level
residuals“：从装修探针级残差




randomeffects: random effect estimates from fitting
randomeffects“：从装修随机效应估计

Inherited from ExpressionSet:
继承自ExpressionSet




assayData: Contains matrices with equal dimensions, and with column number equal to nrow(phenoData). assayData must contain a matrix exprs with rows representing features and columns representing samples. It may also contain a matrix se.exprs
assayData：包含与同等尺寸的矩阵，列数等于nrow(phenoData)。 assayData必须包含一个矩阵代表代表样品的特点和列的行exprs。它可能还包含一个矩阵se.exprs




phenoData: See eSet
phenoData：见eSet




annotation: See eSet
annotation：见eSet




featureData: See eSet
featureData：见eSet




experimentData: See eSet
experimentData：见eSet


方法----------Methods----------

Class-specific methods:
类的具体方法：




se.exprs(frmaExpressionSet) Access elements named
se.exprs(frmaExpressionSet)访问元素命名




weights(frmaExpressionSet) Access elements named
weights(frmaExpressionSet)访问元素命名




residuals(frmaExpressionSet) Access elements named
residuals(frmaExpressionSet)访问元素命名




randomeffects(frmaExpressionSet) Access elements named
randomeffects(frmaExpressionSet)访问元素命名

For derived methods (see ExpressionSet).
派生的方法（见ExpressionSet）。


参见----------See Also----------

eSet-class, ExpressionSet-class, frma.
eSet-class，ExpressionSet-class，frma。


举例----------Examples----------


# create an instance of frmaExpressionSet[创建的frmaExpressionSet实例]
new("frmaExpressionSet")

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